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INSTALL report for manta on tokay2

This page was generated on 2020-10-17 11:57:00 -0400 (Sat, 17 Oct 2020).

TO THE DEVELOPERS/MAINTAINERS OF THE manta PACKAGE: Please make sure to use the following settings in order to reproduce any error or warning you see on this page.
Package 981/1905HostnameOS / ArchINSTALLBUILDCHECKBUILD BIN
manta 1.34.0
Chris Berthiaume , Adrian Marchetti
Snapshot Date: 2020-10-16 14:40:19 -0400 (Fri, 16 Oct 2020)
URL: https://git.bioconductor.org/packages/manta
Branch: RELEASE_3_11
Last Commit: ca7ddbf
Last Changed Date: 2020-04-27 14:28:19 -0400 (Mon, 27 Apr 2020)
malbec2 Linux (Ubuntu 18.04.4 LTS) / x86_64  OK  ERROR  skipped 
tokay2 Windows Server 2012 R2 Standard / x64 [ OK ] ERROR  skipped  skipped 
machv2 macOS 10.14.6 Mojave / x86_64  OK  ERROR  skipped  skipped 

Summary

Package: manta
Version: 1.34.0
Command: C:\cygwin\bin\curl.exe -O https://malbec2.bioconductor.org/BBS/3.11/bioc/src/contrib/manta_1.34.0.tar.gz && rm -rf manta.buildbin-libdir && mkdir manta.buildbin-libdir && C:\Users\biocbuild\bbs-3.11-bioc\R\bin\R.exe CMD INSTALL --merge-multiarch --build --library=manta.buildbin-libdir manta_1.34.0.tar.gz && C:\Users\biocbuild\bbs-3.11-bioc\R\bin\R.exe CMD INSTALL manta_1.34.0.zip && rm manta_1.34.0.tar.gz manta_1.34.0.zip
StartedAt: 2020-10-16 17:38:23 -0400 (Fri, 16 Oct 2020)
EndedAt: 2020-10-16 17:39:31 -0400 (Fri, 16 Oct 2020)
EllapsedTime: 67.8 seconds
RetCode: 0
Status:  OK  

Command output

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###
### Running command:
###
###   C:\cygwin\bin\curl.exe -O https://malbec2.bioconductor.org/BBS/3.11/bioc/src/contrib/manta_1.34.0.tar.gz && rm -rf manta.buildbin-libdir && mkdir manta.buildbin-libdir && C:\Users\biocbuild\bbs-3.11-bioc\R\bin\R.exe CMD INSTALL --merge-multiarch --build --library=manta.buildbin-libdir manta_1.34.0.tar.gz && C:\Users\biocbuild\bbs-3.11-bioc\R\bin\R.exe CMD INSTALL manta_1.34.0.zip && rm manta_1.34.0.tar.gz manta_1.34.0.zip
###
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  % Total    % Received % Xferd  Average Speed   Time    Time     Time  Current
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  0     0    0     0    0     0      0      0 --:--:-- --:--:-- --:--:--     0
100  675k  100  675k    0     0  9093k      0 --:--:-- --:--:-- --:--:--  9.8M

install for i386

* installing *source* package 'manta' ...
** using staged installation
** R
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
  converting help for package 'manta'
    finding HTML links ... done
    cmdArgsToVariables                      html  
    collapseRepliCounts                     html  
    compbiasPlot                            html  
    compbiasTest                            html  
    generateWeights                         html  
    in2manta                                html  
    makeSampleDF                            html  
    manta-class                             html  
    manta                                   html  
    meta2counts                             html  
    metataxa2subcounts                      html  
    nf2nr                                   html  
    normfact2absTMM                         html  
    nr                                      html  
    outliers                                html  
    plot.manta                              html  
    pplacer2manta                           html  
    readSeastar                             html  
    seastar2counts                          html  
    summary.manta                           html  
** building package indices
** installing vignettes
** testing if installed package can be loaded from temporary location
Warning: Package 'manta' is deprecated and will be removed from Bioconductor
  version 3.12
** testing if installed package can be loaded from final location
Warning: Package 'manta' is deprecated and will be removed from Bioconductor
  version 3.12
** testing if installed package keeps a record of temporary installation path

install for x64

* installing *source* package 'manta' ...
** testing if installed package can be loaded
Warning: Package 'manta' is deprecated and will be removed from Bioconductor
  version 3.12
* MD5 sums
packaged installation of 'manta' as manta_1.34.0.zip
* DONE (manta)
* installing to library 'C:/Users/biocbuild/bbs-3.11-bioc/R/library'
package 'manta' successfully unpacked and MD5 sums checked