Multiple platform build/check report for BioC 3.11 - CHECK report for maSigPro on celaya2

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### Running command:
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###   /Library/Frameworks/R.framework/Versions/Current/Resources/bin/R CMD check --install=check:maSigPro.install-out.txt --library=/Library/Frameworks/R.framework/Versions/Current/Resources/library --no-vignettes --timings maSigPro_1.59.0.tar.gz
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* using log directory ‘/Users/biocbuild/bbs-3.11-bioc/meat/maSigPro.Rcheck’
* using R Under development (unstable) (2019-12-14 r77572)
* using platform: x86_64-apple-darwin15.6.0 (64-bit)
* using session charset: UTF-8
* using option ‘--no-vignettes’
* checking for file ‘maSigPro/DESCRIPTION’ ... OK
* checking extension type ... Package
* this is package ‘maSigPro’ version ‘1.59.0’
* checking package namespace information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking if there is a namespace ... OK
* checking for hidden files and directories ... OK
* checking for portable file names ... OK
* checking for sufficient/correct file permissions ... OK
* checking whether package ‘maSigPro’ can be installed ... OK
* checking installed package size ... OK
* checking package directory ... OK
* checking ‘build’ directory ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking for left-over files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking R files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* checking whether the package can be loaded ... OK
* checking whether the package can be loaded with stated dependencies ... OK
* checking whether the package can be unloaded cleanly ... OK
* checking whether the namespace can be loaded with stated dependencies ... OK
* checking whether the namespace can be unloaded cleanly ... OK
* checking dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... OK
* checking Rd files ... OK
* checking Rd metadata ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking contents of ‘data’ directory ... OK
* checking data for non-ASCII characters ... OK
* checking data for ASCII and uncompressed saves ... OK
* checking sizes of PDF files under ‘inst/doc’ ... OK
* checking installed files from ‘inst/doc’ ... OK
* checking files in ‘vignettes’ ... OK
* checking examples ... OK
Examples with CPU (user + system) or elapsed time > 5s
                user system elapsed
getDS         24.665  0.522  25.325
getDSPatterns 24.199  0.506  24.877
seeDS         23.045  0.822  23.964
tableDS       22.949  0.834  23.870
ISOdata       21.226  1.068  22.295
ISOdesign     21.042  0.810  21.855
IsoModel      20.209  0.898  21.260
IsoPlot       19.734  0.784  20.569
PodiumChange  19.596  0.684  20.279
T.fit         10.405  0.087  10.492
maSigPro       7.355  0.075   7.441
get.siggenes   5.285  0.041   5.331
* checking for unstated dependencies in vignettes ... OK
* checking package vignettes in ‘inst/doc’ ... OK
* checking running R code from vignettes ... SKIPPED
* checking re-building of vignette outputs ... SKIPPED
* checking PDF version of manual ... OK
* DONE

Status: OK

Installation output

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### Running command:
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###   /Library/Frameworks/R.framework/Versions/Current/Resources/bin/R CMD INSTALL maSigPro
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* installing to library ‘/Library/Frameworks/R.framework/Versions/4.0/Resources/library’
* installing *source* package ‘maSigPro’ ...
** using staged installation
** R
** data
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
** building package indices
** installing vignettes
   ‘maSigPro.Rnw’ 
** testing if installed package can be loaded from temporary location
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path
* DONE (maSigPro)

Tests output

Example timings

name	user	system	elapsed
ISOdata	21.226	1.068	22.295
ISOdesign	21.042	0.810	21.855
IsoModel	20.209	0.898	21.260
IsoPlot	19.734	0.784	20.569
NBdata	0.003	0.002	0.005
NBdesign	0.002	0.002	0.004
PlotGroups	0.066	0.006	0.082
PlotProfiles	0.014	0.005	0.027
PodiumChange	19.596	0.684	20.279
T.fit	10.405	0.087	10.492
average.rows	0.004	0.001	0.005
data.abiotic	0.005	0.002	0.008
edesign.abiotic	0.003	0.002	0.005
edesignCT	0.001	0.001	0.003
edesignDR	0.001	0.001	0.002
get.siggenes	5.285	0.041	5.331
getDS	24.665	0.522	25.325
getDSPatterns	24.199	0.506	24.877
i.rank	0.001	0.000	0.001
maSigPro	7.355	0.075	7.441
maSigProUsersGuide	0.007	0.006	0.013
make.design.matrix	0.019	0.019	0.037
p.vector	3.333	0.045	3.378
position	0.000	0.001	0.000
reg.coeffs	0.001	0.000	0.001
see.genes	1.467	0.280	2.037
seeDS	23.045	0.822	23.964
stepback	0.034	0.000	0.035
stepfor	0.184	0.001	0.184
suma2Venn	0.028	0.005	0.049
tableDS	22.949	0.834	23.870
two.ways.stepback	0.196	0.002	0.199
two.ways.stepfor	0.234	0.004	0.238

CHECK report for maSigPro on celaya2

Summary

Command output

Installation output

Tests output

Example timings