Back to Multiple platform build/check report for BioC 3.11
ABCDEF[G]HIJKLMNOPQRSTUVWXYZ

INSTALL report for graph on tokay2

This page was generated on 2020-10-17 11:56:45 -0400 (Sat, 17 Oct 2020).

TO THE DEVELOPERS/MAINTAINERS OF THE graph PACKAGE: Please make sure to use the following settings in order to reproduce any error or warning you see on this page.
Package 771/1905HostnameOS / ArchINSTALLBUILDCHECKBUILD BIN
graph 1.66.0
Bioconductor Package Maintainer
Snapshot Date: 2020-10-16 14:40:19 -0400 (Fri, 16 Oct 2020)
URL: https://git.bioconductor.org/packages/graph
Branch: RELEASE_3_11
Last Commit: a09c8a9
Last Changed Date: 2020-04-27 14:08:14 -0400 (Mon, 27 Apr 2020)
malbec2 Linux (Ubuntu 18.04.4 LTS) / x86_64  OK  OK  OK UNNEEDED, same version exists in internal repository
tokay2 Windows Server 2012 R2 Standard / x64 [ OK ] OK  OK  OK UNNEEDED, same version exists in internal repository
machv2 macOS 10.14.6 Mojave / x86_64  OK  OK  OK  OK UNNEEDED, same version exists in internal repository

Summary

Package: graph
Version: 1.66.0
Command: C:\cygwin\bin\curl.exe -O https://malbec2.bioconductor.org/BBS/3.11/bioc/src/contrib/graph_1.66.0.tar.gz && rm -rf graph.buildbin-libdir && mkdir graph.buildbin-libdir && C:\Users\biocbuild\bbs-3.11-bioc\R\bin\R.exe CMD INSTALL --merge-multiarch --build --library=graph.buildbin-libdir graph_1.66.0.tar.gz && C:\Users\biocbuild\bbs-3.11-bioc\R\bin\R.exe CMD INSTALL graph_1.66.0.zip && rm graph_1.66.0.tar.gz graph_1.66.0.zip
StartedAt: 2020-10-16 17:50:19 -0400 (Fri, 16 Oct 2020)
EndedAt: 2020-10-16 17:52:45 -0400 (Fri, 16 Oct 2020)
EllapsedTime: 146.5 seconds
RetCode: 0
Status:  OK  

Command output

##############################################################################
##############################################################################
###
### Running command:
###
###   C:\cygwin\bin\curl.exe -O https://malbec2.bioconductor.org/BBS/3.11/bioc/src/contrib/graph_1.66.0.tar.gz && rm -rf graph.buildbin-libdir && mkdir graph.buildbin-libdir && C:\Users\biocbuild\bbs-3.11-bioc\R\bin\R.exe CMD INSTALL --merge-multiarch --build --library=graph.buildbin-libdir graph_1.66.0.tar.gz && C:\Users\biocbuild\bbs-3.11-bioc\R\bin\R.exe CMD INSTALL graph_1.66.0.zip && rm graph_1.66.0.tar.gz graph_1.66.0.zip
###
##############################################################################
##############################################################################


  % Total    % Received % Xferd  Average Speed   Time    Time     Time  Current
                                 Dload  Upload   Total   Spent    Left  Speed

  0     0    0     0    0     0      0      0 --:--:-- --:--:-- --:--:--     0
  0  328k    0     0    0     0      0      0 --:--:-- --:--:-- --:--:--     0
100  328k  100  328k    0     0  4785k      0 --:--:-- --:--:-- --:--:-- 5301k

install for i386

* installing *source* package 'graph' ...
** using staged installation
** libs
"C:/rtools40/mingw32/bin/"gcc  -I"C:/Users/BIOCBU~1/BBS-3~1.11-/R/include" -DNDEBUG     -I"C:/extsoft/include"     -O2 -Wall  -std=gnu99 -mfpmath=sse -msse2 -mstackrealign -c graph.c -o graph.o
C:/rtools40/mingw32/bin/gcc -shared -s -static-libgcc -o graph.dll tmp.def graph.o -LC:/extsoft/lib/i386 -LC:/extsoft/lib -LC:/Users/BIOCBU~1/BBS-3~1.11-/R/bin/i386 -lR
mv graph.dll BioC_graph.dll
installing to C:/Users/biocbuild/bbs-3.11-bioc/meat/graph.buildbin-libdir/00LOCK-graph/00new/graph/libs/i386
** R
** data
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
  converting help for package 'graph'
    finding HTML links ... done
    DFS                                     html  
    IMCA                                    html  
    MAPKsig                                 html  
    MultiGraph-class                        html  
    acc-methods                             html  
    addEdge                                 html  
    addNode                                 html  
    adj-methods                             html  
    adjacencyMatrix                         html  
    apoptosisGraph                          html  
    attrData-class                          html  
    attrDataItem-methods                    html  
    attrDefaults-methods                    html  
    aveNumEdges                             html  
    biocRepos                               html  
    boundary                                html  
    calcProb                                html  
    calcSumProb                             html  
    clearNode                               html  
    clusterGraph-class                      html  
    clusteringCoefficient-methods           html  
    combineNodes                            html  
    defunct                                 html  
    distGraph-class                         html  
    duplicatedEdges                         html  
    edgeData-methods                        html  
    edgeDataDefaults-methods                html  
    edgeMatrix                              html  
    edgeSets                                html  
    edgeWeights                             html  
    fromGXL-methods                         html  
    graph-class                             html  
    graph2SparseM                           html  
    graphAM-class                           html  
    graphBAM-class                          html  
    graphExamples                           html  
    graphNEL-class                          html  
    inEdges                                 html  
    internal                                html  
    isAdjacent-methods                      html  
    isDirected-methods                      html  
    leaves                                  html  
    listEdges                               html  
    matrix2Graph                            html  
    mostEdges                               html  
    multigraph                              html  
    nodeData-methods                        html  
    nodeDataDefaults-methods                html  
    numNoEdges                              html  
    pancrCaIni                              html  
    randomEGraph                            html  
    randomGraph                             html  
    randomNodeGraph                         html  
    removeEdge                              html  
    removeNode                              html  
    renderInfo-class                        html  
    reverseEdgeDirections                   html  
    settings                                html  
    simpleEdge-class                        html  
    standardLabeling                        html  
    subGraph                                html  
    toDotR-methods                          html  
    toDotWithRI                             html  
    ugraph                                  html  
    validGraph                              html  
    write.tlp                               html  
** building package indices
** installing vignettes
** testing if installed package can be loaded from temporary location
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path

install for x64

* installing *source* package 'graph' ...
** libs
"C:/rtools40/mingw64/bin/"gcc  -I"C:/Users/BIOCBU~1/BBS-3~1.11-/R/include" -DNDEBUG     -I"C:/extsoft/include"     -O2 -Wall  -std=gnu99 -mfpmath=sse -msse2 -mstackrealign -c graph.c -o graph.o
C:/rtools40/mingw64/bin/gcc -shared -s -static-libgcc -o graph.dll tmp.def graph.o -LC:/extsoft/lib/x64 -LC:/extsoft/lib -LC:/Users/BIOCBU~1/BBS-3~1.11-/R/bin/x64 -lR
mv graph.dll BioC_graph.dll
installing to C:/Users/biocbuild/bbs-3.11-bioc/meat/graph.buildbin-libdir/graph/libs/x64
** testing if installed package can be loaded
* MD5 sums
packaged installation of 'graph' as graph_1.66.0.zip
* DONE (graph)
* installing to library 'C:/Users/biocbuild/bbs-3.11-bioc/R/library'
package 'graph' successfully unpacked and MD5 sums checked