Greg Finak
| Snapshot Date: 2020-10-16 14:40:19 -0400 (Fri, 16 Oct 2020) |
| URL: https://git.bioconductor.org/packages/flowStats |
| Branch: RELEASE_3_11 |
| Last Commit: b51b995 |
| Last Changed Date: 2020-04-27 14:19:17 -0400 (Mon, 27 Apr 2020) |
| Back to Multiple platform build/check report for BioC 3.11 |
|
This page was generated on 2020-10-17 11:56:35 -0400 (Sat, 17 Oct 2020).
| TO THE DEVELOPERS/MAINTAINERS OF THE flowStats PACKAGE: Please make sure to use the following settings in order to reproduce any error or warning you see on this page. |
| Package 626/1905 | Hostname | OS / Arch | INSTALL | BUILD | CHECK | BUILD BIN | ||||||
| flowStats 4.0.0 Greg Finak
| malbec2 | Linux (Ubuntu 18.04.4 LTS) / x86_64 | OK | OK | OK | | ||||||
| tokay2 | Windows Server 2012 R2 Standard / x64 | [ OK ] | OK | WARNINGS | OK | | ||||||
| machv2 | macOS 10.14.6 Mojave / x86_64 | OK | OK | OK | OK | |
| Package: flowStats |
| Version: 4.0.0 |
| Command: C:\cygwin\bin\curl.exe -O https://malbec2.bioconductor.org/BBS/3.11/bioc/src/contrib/flowStats_4.0.0.tar.gz && rm -rf flowStats.buildbin-libdir && mkdir flowStats.buildbin-libdir && C:\Users\biocbuild\bbs-3.11-bioc\R\bin\R.exe CMD INSTALL --merge-multiarch --build --library=flowStats.buildbin-libdir flowStats_4.0.0.tar.gz && C:\Users\biocbuild\bbs-3.11-bioc\R\bin\R.exe CMD INSTALL flowStats_4.0.0.zip && rm flowStats_4.0.0.tar.gz flowStats_4.0.0.zip |
| StartedAt: 2020-10-16 18:19:39 -0400 (Fri, 16 Oct 2020) |
| EndedAt: 2020-10-16 18:21:01 -0400 (Fri, 16 Oct 2020) |
| EllapsedTime: 82.4 seconds |
| RetCode: 0 |
| Status: OK |
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### Running command:
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### C:\cygwin\bin\curl.exe -O https://malbec2.bioconductor.org/BBS/3.11/bioc/src/contrib/flowStats_4.0.0.tar.gz && rm -rf flowStats.buildbin-libdir && mkdir flowStats.buildbin-libdir && C:\Users\biocbuild\bbs-3.11-bioc\R\bin\R.exe CMD INSTALL --merge-multiarch --build --library=flowStats.buildbin-libdir flowStats_4.0.0.tar.gz && C:\Users\biocbuild\bbs-3.11-bioc\R\bin\R.exe CMD INSTALL flowStats_4.0.0.zip && rm flowStats_4.0.0.tar.gz flowStats_4.0.0.zip
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install for i386
* installing *source* package 'flowStats' ...
** using staged installation
** R
** data
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
converting help for package 'flowStats'
finding HTML links ... done
BackGating html
ITN html
addName-methods html
autoGate html
Rd warning: C:/Users/biocbuild/bbs-3.11-bioc/tmpdir/Rtmp88KeAZ/R.INSTALLdb41c1c6aac/flowStats/man/autoGate.Rd:21: file link 'rectangleGate' in package 'flowCore' does not exist and so has been treated as a topic
Rd warning: C:/Users/biocbuild/bbs-3.11-bioc/tmpdir/Rtmp88KeAZ/R.INSTALLdb41c1c6aac/flowStats/man/autoGate.Rd:25: file link 'norm2Filter' in package 'flowStats' does not exist and so has been treated as a topic
Rd warning: C:/Users/biocbuild/bbs-3.11-bioc/tmpdir/Rtmp88KeAZ/R.INSTALLdb41c1c6aac/flowStats/man/autoGate.Rd:54: file link 'norm2Filter' in package 'flowStats' does not exist and so has been treated as a topic
binByRef html
calcPBChiSquare html
calcPearsonChi html
curv1Filter-class html
finding level-2 HTML links ... done
curv2Filter-class html
curvPeaks html
density1d html
fdPar html
flowStats-package html
gate_singlet html
Rd warning: C:/Users/biocbuild/bbs-3.11-bioc/tmpdir/Rtmp88KeAZ/R.INSTALLdb41c1c6aac/flowStats/man/gate_singlet.Rd:65: file link 'polygonGate' in package 'flowCore' does not exist and so has been treated as a topic
gaussNorm html
gpaSet html
iProcrustes html
idFeaturesByBackgating html
landmarkMatrix html
lymphGate html
Rd warning: C:/Users/biocbuild/bbs-3.11-bioc/tmpdir/Rtmp88KeAZ/R.INSTALLdb41c1c6aac/flowStats/man/lymphGate.Rd:79: file link 'norm2Filter' in package 'flowStats' does not exist and so has been treated as a topic
Rd warning: C:/Users/biocbuild/bbs-3.11-bioc/tmpdir/Rtmp88KeAZ/R.INSTALLdb41c1c6aac/flowStats/man/lymphGate.Rd:83: file link 'rectangleGate' in package 'flowCore' does not exist and so has been treated as a topic
Rd warning: C:/Users/biocbuild/bbs-3.11-bioc/tmpdir/Rtmp88KeAZ/R.INSTALLdb41c1c6aac/flowStats/man/lymphGate.Rd:133: file link 'ellipsoidGate' in package 'flowCore' does not exist and so has been treated as a topic
Rd warning: C:/Users/biocbuild/bbs-3.11-bioc/tmpdir/Rtmp88KeAZ/R.INSTALLdb41c1c6aac/flowStats/man/lymphGate.Rd:141: file link 'norm2Filter' in package 'flowStats' does not exist and so has been treated as a topic
norm2Filter-class html
normQA html
normalize html
Rd warning: C:/Users/biocbuild/bbs-3.11-bioc/tmpdir/Rtmp88KeAZ/R.INSTALLdb41c1c6aac/flowStats/man/normalize.Rd:58: file link 'ncdfFlowSet' in package 'ncdfFlow' does not exist and so has been treated as a topic
overton_like html
plotBins html
proBin html
quadrantGate html
Rd warning: C:/Users/biocbuild/bbs-3.11-bioc/tmpdir/Rtmp88KeAZ/R.INSTALLdb41c1c6aac/flowStats/man/quadrantGate.Rd:71: file link 'quadGate' in package 'flowCore' does not exist and so has been treated as a topic
Rd warning: C:/Users/biocbuild/bbs-3.11-bioc/tmpdir/Rtmp88KeAZ/R.INSTALLdb41c1c6aac/flowStats/man/quadrantGate.Rd:79: file link 'quadGate' in package 'flowCore' does not exist and so has been treated as a topic
rangeGate html
Rd warning: C:/Users/biocbuild/bbs-3.11-bioc/tmpdir/Rtmp88KeAZ/R.INSTALLdb41c1c6aac/flowStats/man/rangeGate.Rd:135: file link 'rectangleGate' in package 'flowCore' does not exist and so has been treated as a topic
Rd warning: C:/Users/biocbuild/bbs-3.11-bioc/tmpdir/Rtmp88KeAZ/R.INSTALLdb41c1c6aac/flowStats/man/rangeGate.Rd:145: file link 'rectangleGate' in package 'flowCore' does not exist and so has been treated as a topic
spillover-flowSet html
Rd warning: C:/Users/biocbuild/bbs-3.11-bioc/tmpdir/Rtmp88KeAZ/R.INSTALLdb41c1c6aac/flowStats/man/spillover-flowSet.Rd:41: file link 'norm2Filter' in package 'flowStats' does not exist and so has been treated as a topic
spillover_match-flowSet html
spillover_ng-flowSet html
warpSet html
** building package indices
** installing vignettes
** testing if installed package can be loaded from temporary location
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path
install for x64
* installing *source* package 'flowStats' ...
** testing if installed package can be loaded
* MD5 sums
packaged installation of 'flowStats' as flowStats_4.0.0.zip
* DONE (flowStats)
* installing to library 'C:/Users/biocbuild/bbs-3.11-bioc/R/library'
package 'flowStats' successfully unpacked and MD5 sums checked