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INSTALL report for flowFP on tokay2

This page was generated on 2020-10-17 11:56:35 -0400 (Sat, 17 Oct 2020).

TO THE DEVELOPERS/MAINTAINERS OF THE flowFP PACKAGE: Please make sure to use the following settings in order to reproduce any error or warning you see on this page.
Package 614/1905HostnameOS / ArchINSTALLBUILDCHECKBUILD BIN
flowFP 1.46.0
Herb Holyst
Snapshot Date: 2020-10-16 14:40:19 -0400 (Fri, 16 Oct 2020)
URL: https://git.bioconductor.org/packages/flowFP
Branch: RELEASE_3_11
Last Commit: c405979
Last Changed Date: 2020-04-27 14:19:37 -0400 (Mon, 27 Apr 2020)
malbec2 Linux (Ubuntu 18.04.4 LTS) / x86_64  OK  OK  OK UNNEEDED, same version exists in internal repository
tokay2 Windows Server 2012 R2 Standard / x64 [ OK ] OK  OK  OK UNNEEDED, same version exists in internal repository
machv2 macOS 10.14.6 Mojave / x86_64  OK  OK  OK  OK UNNEEDED, same version exists in internal repository

Summary

Package: flowFP
Version: 1.46.0
Command: C:\cygwin\bin\curl.exe -O https://malbec2.bioconductor.org/BBS/3.11/bioc/src/contrib/flowFP_1.46.0.tar.gz && rm -rf flowFP.buildbin-libdir && mkdir flowFP.buildbin-libdir && C:\Users\biocbuild\bbs-3.11-bioc\R\bin\R.exe CMD INSTALL --merge-multiarch --build --library=flowFP.buildbin-libdir flowFP_1.46.0.tar.gz && C:\Users\biocbuild\bbs-3.11-bioc\R\bin\R.exe CMD INSTALL flowFP_1.46.0.zip && rm flowFP_1.46.0.tar.gz flowFP_1.46.0.zip
StartedAt: 2020-10-16 17:13:58 -0400 (Fri, 16 Oct 2020)
EndedAt: 2020-10-16 17:15:08 -0400 (Fri, 16 Oct 2020)
EllapsedTime: 69.8 seconds
RetCode: 0
Status:  OK  

Command output

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###
### Running command:
###
###   C:\cygwin\bin\curl.exe -O https://malbec2.bioconductor.org/BBS/3.11/bioc/src/contrib/flowFP_1.46.0.tar.gz && rm -rf flowFP.buildbin-libdir && mkdir flowFP.buildbin-libdir && C:\Users\biocbuild\bbs-3.11-bioc\R\bin\R.exe CMD INSTALL --merge-multiarch --build --library=flowFP.buildbin-libdir flowFP_1.46.0.tar.gz && C:\Users\biocbuild\bbs-3.11-bioc\R\bin\R.exe CMD INSTALL flowFP_1.46.0.zip && rm flowFP_1.46.0.tar.gz flowFP_1.46.0.zip
###
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  0     0    0     0    0     0      0      0 --:--:-- --:--:-- --:--:--     0
100 4456k  100 4456k    0     0  51.0M      0 --:--:-- --:--:-- --:--:-- 55.0M

install for i386

* installing *source* package 'flowFP' ...
** using staged installation

   **********************************************
   WARNING: this package has a configure script
         It probably needs manual configuration
   **********************************************


** libs
"C:/rtools40/mingw32/bin/"gcc  -I"C:/Users/BIOCBU~1/BBS-3~1.11-/R/include" -DNDEBUG     -I"C:/extsoft/include"     -O2 -Wall  -std=gnu99 -mfpmath=sse -msse2 -mstackrealign -c flowFP.c -o flowFP.o
"C:/rtools40/mingw32/bin/"gcc  -I"C:/Users/BIOCBU~1/BBS-3~1.11-/R/include" -DNDEBUG     -I"C:/extsoft/include"     -O2 -Wall  -std=gnu99 -mfpmath=sse -msse2 -mstackrealign -c init.c -o init.o
"C:/rtools40/mingw32/bin/"gcc  -I"C:/Users/BIOCBU~1/BBS-3~1.11-/R/include" -DNDEBUG     -I"C:/extsoft/include"     -O2 -Wall  -std=gnu99 -mfpmath=sse -msse2 -mstackrealign -c split_utils.c -o split_utils.o
C:/rtools40/mingw32/bin/gcc -shared -s -static-libgcc -o flowFP.dll tmp.def flowFP.o init.o split_utils.o -LC:/extsoft/lib/i386 -LC:/extsoft/lib -LC:/Users/BIOCBU~1/BBS-3~1.11-/R/bin/i386 -lR
installing to C:/Users/biocbuild/bbs-3.11-bioc/meat/flowFP.buildbin-libdir/00LOCK-flowFP/00new/flowFP/libs/i386
** R
** data
** inst
** byte-compile and prepare package for lazy loading
Creating a generic function for 'append' from package 'base' in package 'flowFP'
** help
*** installing help indices
  converting help for package 'flowFP'
    finding HTML links ... done
    append-methods                          html  
    binBoundary-methods                     html  
    counts-methods                          html  
    flowFP-class                            html  
    flowFP-package                          html  
    flowFP                                  html  
    flowFPModel-class                       html  
    flowFPModel                             html  
    flowFPPlex-class                        html  
    flowFPPlex                              html  
    fs1                                     html  
    fs2                                     html  
    hasClasses-methods                      html  
    index-methods                           html  
    is.flowFP                               html  
    is.flowFPModel                          html  
    is.flowFPPlex                           html  
    length-methods                          html  
    nFeatures-methods                       html  
    nInstances-methods                      html  
    nRecursions-methods                     html  
    name-methods                            html  
    parameters-methods                      html  
    plate                                   html  
    plot-methods                            html  
    sampleClasses-methods                   html  
    sampleNames-methods                     html  
    show-methods                            html  
    summary-methods                         html  
    tags-methods                            html  
** building package indices
** installing vignettes
** testing if installed package can be loaded from temporary location
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path

install for x64

* installing *source* package 'flowFP' ...

   **********************************************
   WARNING: this package has a configure script
         It probably needs manual configuration
   **********************************************


** libs
"C:/rtools40/mingw64/bin/"gcc  -I"C:/Users/BIOCBU~1/BBS-3~1.11-/R/include" -DNDEBUG     -I"C:/extsoft/include"     -O2 -Wall  -std=gnu99 -mfpmath=sse -msse2 -mstackrealign -c flowFP.c -o flowFP.o
"C:/rtools40/mingw64/bin/"gcc  -I"C:/Users/BIOCBU~1/BBS-3~1.11-/R/include" -DNDEBUG     -I"C:/extsoft/include"     -O2 -Wall  -std=gnu99 -mfpmath=sse -msse2 -mstackrealign -c init.c -o init.o
"C:/rtools40/mingw64/bin/"gcc  -I"C:/Users/BIOCBU~1/BBS-3~1.11-/R/include" -DNDEBUG     -I"C:/extsoft/include"     -O2 -Wall  -std=gnu99 -mfpmath=sse -msse2 -mstackrealign -c split_utils.c -o split_utils.o
C:/rtools40/mingw64/bin/gcc -shared -s -static-libgcc -o flowFP.dll tmp.def flowFP.o init.o split_utils.o -LC:/extsoft/lib/x64 -LC:/extsoft/lib -LC:/Users/BIOCBU~1/BBS-3~1.11-/R/bin/x64 -lR
installing to C:/Users/biocbuild/bbs-3.11-bioc/meat/flowFP.buildbin-libdir/flowFP/libs/x64
** testing if installed package can be loaded
* MD5 sums
packaged installation of 'flowFP' as flowFP_1.46.0.zip
* DONE (flowFP)
* installing to library 'C:/Users/biocbuild/bbs-3.11-bioc/R/library'
package 'flowFP' successfully unpacked and MD5 sums checked