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CHECK report for enrichplot on tokay2

This page was generated on 2020-10-17 11:56:31 -0400 (Sat, 17 Oct 2020).

TO THE DEVELOPERS/MAINTAINERS OF THE enrichplot PACKAGE: Please make sure to use the following settings in order to reproduce any error or warning you see on this page.
Package 546/1905HostnameOS / ArchINSTALLBUILDCHECKBUILD BIN
enrichplot 1.8.1
Guangchuang Yu
Snapshot Date: 2020-10-16 14:40:19 -0400 (Fri, 16 Oct 2020)
URL: https://git.bioconductor.org/packages/enrichplot
Branch: RELEASE_3_11
Last Commit: e55d9f1
Last Changed Date: 2020-04-29 05:43:58 -0400 (Wed, 29 Apr 2020)
malbec2 Linux (Ubuntu 18.04.4 LTS) / x86_64  OK  OK  OK UNNEEDED, same version exists in internal repository
tokay2 Windows Server 2012 R2 Standard / x64  OK  OK [ WARNINGS ] OK UNNEEDED, same version exists in internal repository
machv2 macOS 10.14.6 Mojave / x86_64  OK  OK  OK  OK UNNEEDED, same version exists in internal repository

Summary

Package: enrichplot
Version: 1.8.1
Command: C:\Users\biocbuild\bbs-3.11-bioc\R\bin\R.exe CMD check --force-multiarch --install=check:enrichplot.install-out.txt --library=C:\Users\biocbuild\bbs-3.11-bioc\R\library --no-vignettes --timings enrichplot_1.8.1.tar.gz
StartedAt: 2020-10-17 03:44:24 -0400 (Sat, 17 Oct 2020)
EndedAt: 2020-10-17 03:49:41 -0400 (Sat, 17 Oct 2020)
EllapsedTime: 316.6 seconds
RetCode: 0
Status:  WARNINGS  
CheckDir: enrichplot.Rcheck
Warnings: 1

Command output

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###
### Running command:
###
###   C:\Users\biocbuild\bbs-3.11-bioc\R\bin\R.exe CMD check --force-multiarch --install=check:enrichplot.install-out.txt --library=C:\Users\biocbuild\bbs-3.11-bioc\R\library --no-vignettes --timings enrichplot_1.8.1.tar.gz
###
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* using log directory 'C:/Users/biocbuild/bbs-3.11-bioc/meat/enrichplot.Rcheck'
* using R version 4.0.3 (2020-10-10)
* using platform: x86_64-w64-mingw32 (64-bit)
* using session charset: ISO8859-1
* using option '--no-vignettes'
* checking for file 'enrichplot/DESCRIPTION' ... OK
* this is package 'enrichplot' version '1.8.1'
* package encoding: UTF-8
* checking package namespace information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking if there is a namespace ... OK
* checking for hidden files and directories ... OK
* checking for portable file names ... OK
* checking whether package 'enrichplot' can be installed ... WARNING
Found the following significant warnings:
  Rd warning: C:/Users/biocbuild/bbs-3.11-bioc/tmpdir/RtmpMljW31/R.INSTALL1d04636a74f2/enrichplot/man/reexports.Rd:17: file link 'ggtitle' in package 'ggplot2' does not exist and so has been treated as a topic
See 'C:/Users/biocbuild/bbs-3.11-bioc/meat/enrichplot.Rcheck/00install.out' for details.
* checking installed package size ... OK
* checking package directory ... OK
* checking 'build' directory ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking for left-over files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking R files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* loading checks for arch 'i386'
** checking whether the package can be loaded ... OK
** checking whether the package can be loaded with stated dependencies ... OK
** checking whether the package can be unloaded cleanly ... OK
** checking whether the namespace can be loaded with stated dependencies ... OK
** checking whether the namespace can be unloaded cleanly ... OK
* loading checks for arch 'x64'
** checking whether the package can be loaded ... OK
** checking whether the package can be loaded with stated dependencies ... OK
** checking whether the package can be unloaded cleanly ... OK
** checking whether the namespace can be loaded with stated dependencies ... OK
** checking whether the namespace can be unloaded cleanly ... OK
* checking dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... OK
* checking Rd files ... OK
* checking Rd metadata ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking files in 'vignettes' ... OK
* checking examples ...
** running examples for arch 'i386' ... OK
Examples with CPU (user + system) or elapsed time > 5s
          user system elapsed
ridgeplot 3.78   0.19   17.75
gseaplot  3.59   0.34   21.44
** running examples for arch 'x64' ... OK
Examples with CPU (user + system) or elapsed time > 5s
          user system elapsed
gseaplot  4.45   0.10   19.14
ridgeplot 3.72   0.11   20.75
* checking for unstated dependencies in vignettes ... OK
* checking package vignettes in 'inst/doc' ... OK
* checking running R code from vignettes ... SKIPPED
* checking re-building of vignette outputs ... SKIPPED
* checking PDF version of manual ... OK
* DONE

Status: 1 WARNING
See
  'C:/Users/biocbuild/bbs-3.11-bioc/meat/enrichplot.Rcheck/00check.log'
for details.



Installation output

enrichplot.Rcheck/00install.out

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###
### Running command:
###
###   C:\cygwin\bin\curl.exe -O https://malbec2.bioconductor.org/BBS/3.11/bioc/src/contrib/enrichplot_1.8.1.tar.gz && rm -rf enrichplot.buildbin-libdir && mkdir enrichplot.buildbin-libdir && C:\Users\biocbuild\bbs-3.11-bioc\R\bin\R.exe CMD INSTALL --merge-multiarch --build --library=enrichplot.buildbin-libdir enrichplot_1.8.1.tar.gz && C:\Users\biocbuild\bbs-3.11-bioc\R\bin\R.exe CMD INSTALL enrichplot_1.8.1.zip && rm enrichplot_1.8.1.tar.gz enrichplot_1.8.1.zip
###
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  % Total    % Received % Xferd  Average Speed   Time    Time     Time  Current
                                 Dload  Upload   Total   Spent    Left  Speed

  0     0    0     0    0     0      0      0 --:--:-- --:--:-- --:--:--     0
100 28325  100 28325    0     0   500k      0 --:--:-- --:--:-- --:--:--  576k

install for i386

* installing *source* package 'enrichplot' ...
** using staged installation
** R
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
  converting help for package 'enrichplot'
    finding HTML links ... done
    barplot.enrichResult                    html  
    cnetplot                                html  
    color_palette                           html  
    dotplot-methods                         html  
    dotplot                                 html  
    emapplot                                html  
    fortify                                 html  
    ggtable                                 html  
    goplot                                  html  
    gsInfo                                  html  
    gseadist                                html  
    gseaplot                                html  
    gseaplot2                               html  
    gsearank                                html  
    heatplot                                html  
    list2graph                              html  
    plotting.clusterProfile                 html  
    pmcplot                                 html  
    reexports                               html  
Rd warning: C:/Users/biocbuild/bbs-3.11-bioc/tmpdir/RtmpMljW31/R.INSTALL1d04636a74f2/enrichplot/man/reexports.Rd:17: file link 'ggtitle' in package 'ggplot2' does not exist and so has been treated as a topic
    ridgeplot                               html  
    upsetplot-methods                       html  
** building package indices
** installing vignettes
** testing if installed package can be loaded from temporary location
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path

install for x64

* installing *source* package 'enrichplot' ...
** testing if installed package can be loaded
* MD5 sums
packaged installation of 'enrichplot' as enrichplot_1.8.1.zip
* DONE (enrichplot)
* installing to library 'C:/Users/biocbuild/bbs-3.11-bioc/R/library'
package 'enrichplot' successfully unpacked and MD5 sums checked

Tests output


Example timings

enrichplot.Rcheck/examples_i386/enrichplot-Ex.timings

nameusersystemelapsed
barplot.enrichResult0.920.101.01
cnetplot1.010.041.07
color_palette000
dotplot0.890.030.92
emapplot1.470.071.53
gseaplot 3.59 0.3421.44
heatplot0.880.030.91
ridgeplot 3.78 0.1917.75
upsetplot-methods1.470.023.23

enrichplot.Rcheck/examples_x64/enrichplot-Ex.timings

nameusersystemelapsed
barplot.enrichResult0.890.040.94
cnetplot1.750.041.78
color_palette000
dotplot1.130.031.15
emapplot1.580.011.60
gseaplot 4.45 0.1019.14
heatplot0.830.010.84
ridgeplot 3.72 0.1120.75
upsetplot-methods1.370.021.39