Back to Multiple platform build/check report for BioC 3.11
ABC[D]EFGHIJKLMNOPQRSTUVWXYZ

BUILD BIN report for discordant on celaya2

This page was generated on 2020-01-16 13:47:04 -0500 (Thu, 16 Jan 2020).

Package 463/1818HostnameOS / ArchINSTALLBUILDCHECKBUILD BIN
discordant 1.11.0
Charlotte Siska
Snapshot Date: 2020-01-15 16:46:30 -0500 (Wed, 15 Jan 2020)
URL: https://git.bioconductor.org/packages/discordant
Branch: master
Last Commit: 4841341
Last Changed Date: 2019-10-29 13:42:14 -0500 (Tue, 29 Oct 2019)
malbec2 Linux (Ubuntu 18.04.3 LTS) / x86_64  OK  OK  WARNINGS UNNEEDED, same version exists in internal repository
tokay2 Windows Server 2012 R2 Standard / x64  OK  OK  WARNINGS  OK UNNEEDED, same version exists in internal repository
celaya2 OS X 10.11.6 El Capitan / x86_64  OK  OK  OK [ OK ]UNNEEDED, same version exists in internal repository

Summary

Package: discordant
Version: 1.11.0
Command: rm -rf discordant.buildbin-libdir && mkdir discordant.buildbin-libdir && /Users/biocbuild/BBS/utils/build-universal.sh discordant_1.11.0.tar.gz /Library/Frameworks/R.framework/Versions/Current/Resources/bin/R discordant.buildbin-libdir
StartedAt: 2020-01-16 10:48:04 -0500 (Thu, 16 Jan 2020)
EndedAt: 2020-01-16 10:48:22 -0500 (Thu, 16 Jan 2020)
EllapsedTime: 17.8 seconds
RetCode: 0
Status:  OK 
PackageFile: discordant_1.11.0.tgz
PackageFileSize: 360.6 KiB

Command output

##############################################################################
##############################################################################
###
### Running command:
###
###   rm -rf discordant.buildbin-libdir && mkdir discordant.buildbin-libdir && /Users/biocbuild/BBS/utils/build-universal.sh discordant_1.11.0.tar.gz /Library/Frameworks/R.framework/Versions/Current/Resources/bin/R discordant.buildbin-libdir
###
##############################################################################
##############################################################################


>>>>>>> 
>>>>>>> INSTALLATION WITH 'R CMD INSTALL --preclean --no-multiarch --library=discordant.buildbin-libdir discordant_1.11.0.tar.gz'
>>>>>>> 

* installing *source* package ‘discordant’ ...
** using staged installation
** libs
clang -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG   -isysroot /Library/Developer/CommandLineTools/SDKs/MacOSX.sdk -I/usr/local/include   -fPIC  -Wall -g -O2  -c discordant.c -o discordant.o
clang -dynamiclib -Wl,-headerpad_max_install_names -undefined dynamic_lookup -single_module -multiply_defined suppress -L/Library/Frameworks/R.framework/Resources/lib -L/usr/local/lib -o discordant.so discordant.o -F/Library/Frameworks/R.framework/.. -framework R -Wl,-framework -Wl,CoreFoundation
installing to /Users/biocbuild/bbs-3.11-bioc/meat/discordant.buildbin-libdir/00LOCK-discordant/00new/discordant/libs
** R
** data
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
** building package indices
** installing vignettes
** testing if installed package can be loaded from temporary location
** checking absolute paths in shared objects and dynamic libraries
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path
* DONE (discordant)


>>>>>>> 
>>>>>>> FIXING LINKS FOR discordant.buildbin-libdir/discordant/libs//discordant.so
>>>>>>> 

install_name_tool -change "/usr/local/lib/libgcc_s.1.dylib" "/Library/Frameworks/R.framework/Versions/4.0/Resources/lib/libgcc_s.1.dylib" "discordant.buildbin-libdir/discordant/libs//discordant.so"
install_name_tool -change "/usr/local/lib/libgfortran.3.dylib" "/Library/Frameworks/R.framework/Versions/4.0/Resources/lib/libgfortran.3.dylib" "discordant.buildbin-libdir/discordant/libs//discordant.so"
install_name_tool -change "/usr/local/lib/libreadline.5.2.dylib" "/Library/Frameworks/R.framework/Versions/4.0/Resources/lib/libreadline.5.2.dylib" "discordant.buildbin-libdir/discordant/libs//discordant.so"
install_name_tool -change "/usr/local/lib/libreadline.dylib" "/Library/Frameworks/R.framework/Versions/4.0/Resources/lib/libreadline.dylib" "discordant.buildbin-libdir/discordant/libs//discordant.so"
install_name_tool -change "/usr/local/lib/libquadmath.0.dylib" "/Library/Frameworks/R.framework/Versions/4.0/Resources/lib/libquadmath.0.dylib" "discordant.buildbin-libdir/discordant/libs//discordant.so"