Astrid Deschenes
| Snapshot Date: 2020-01-15 16:46:30 -0500 (Wed, 15 Jan 2020) |
| URL: https://git.bioconductor.org/packages/consensusSeekeR |
| Branch: master |
| Last Commit: e57e02e |
| Last Changed Date: 2019-10-29 13:40:11 -0500 (Tue, 29 Oct 2019) |
| Back to Multiple platform build/check report for BioC 3.11 |
|
This page was generated on 2020-01-16 13:43:50 -0500 (Thu, 16 Jan 2020).
| Package 353/1818 | Hostname | OS / Arch | INSTALL | BUILD | CHECK | BUILD BIN | ||||||
| consensusSeekeR 1.15.0 Astrid Deschenes
| malbec2 | Linux (Ubuntu 18.04.3 LTS) / x86_64 | OK | OK | OK | | ||||||
| tokay2 | Windows Server 2012 R2 Standard / x64 | OK | OK | OK | OK | | ||||||
| celaya2 | OS X 10.11.6 El Capitan / x86_64 | OK | OK | [ OK ] | OK | |
| Package: consensusSeekeR |
| Version: 1.15.0 |
| Command: /Library/Frameworks/R.framework/Versions/Current/Resources/bin/R CMD check --install=check:consensusSeekeR.install-out.txt --library=/Library/Frameworks/R.framework/Versions/Current/Resources/library --no-vignettes --timings consensusSeekeR_1.15.0.tar.gz |
| StartedAt: 2020-01-16 03:12:49 -0500 (Thu, 16 Jan 2020) |
| EndedAt: 2020-01-16 03:19:14 -0500 (Thu, 16 Jan 2020) |
| EllapsedTime: 385.3 seconds |
| RetCode: 0 |
| Status: OK |
| CheckDir: consensusSeekeR.Rcheck |
| Warnings: 0 |
############################################################################## ############################################################################## ### ### Running command: ### ### /Library/Frameworks/R.framework/Versions/Current/Resources/bin/R CMD check --install=check:consensusSeekeR.install-out.txt --library=/Library/Frameworks/R.framework/Versions/Current/Resources/library --no-vignettes --timings consensusSeekeR_1.15.0.tar.gz ### ############################################################################## ############################################################################## * using log directory ‘/Users/biocbuild/bbs-3.11-bioc/meat/consensusSeekeR.Rcheck’ * using R Under development (unstable) (2019-12-14 r77572) * using platform: x86_64-apple-darwin15.6.0 (64-bit) * using session charset: UTF-8 * using option ‘--no-vignettes’ * checking for file ‘consensusSeekeR/DESCRIPTION’ ... OK * this is package ‘consensusSeekeR’ version ‘1.15.0’ * checking package namespace information ... OK * checking package dependencies ... OK * checking if this is a source package ... OK * checking if there is a namespace ... OK * checking for hidden files and directories ... OK * checking for portable file names ... OK * checking for sufficient/correct file permissions ... OK * checking whether package ‘consensusSeekeR’ can be installed ... OK * checking installed package size ... OK * checking package directory ... OK * checking ‘build’ directory ... OK * checking DESCRIPTION meta-information ... OK * checking top-level files ... OK * checking for left-over files ... OK * checking index information ... OK * checking package subdirectories ... OK * checking R files for non-ASCII characters ... OK * checking R files for syntax errors ... OK * checking whether the package can be loaded ... OK * checking whether the package can be loaded with stated dependencies ... OK * checking whether the package can be unloaded cleanly ... OK * checking whether the namespace can be loaded with stated dependencies ... OK * checking whether the namespace can be unloaded cleanly ... OK * checking dependencies in R code ... OK * checking S3 generic/method consistency ... OK * checking replacement functions ... OK * checking foreign function calls ... OK * checking R code for possible problems ... OK * checking Rd files ... OK * checking Rd metadata ... OK * checking Rd cross-references ... OK * checking for missing documentation entries ... OK * checking for code/documentation mismatches ... OK * checking Rd \usage sections ... OK * checking Rd contents ... OK * checking for unstated dependencies in examples ... OK * checking contents of ‘data’ directory ... OK * checking data for non-ASCII characters ... OK * checking data for ASCII and uncompressed saves ... OK * checking files in ‘vignettes’ ... OK * checking examples ... OK * checking for unstated dependencies in ‘tests’ ... OK * checking tests ... Running ‘runTests.R’ OK * checking for unstated dependencies in vignettes ... OK * checking package vignettes in ‘inst/doc’ ... OK * checking running R code from vignettes ... SKIPPED * checking re-building of vignette outputs ... SKIPPED * checking PDF version of manual ... OK * DONE Status: OK
consensusSeekeR.Rcheck/00install.out
############################################################################## ############################################################################## ### ### Running command: ### ### /Library/Frameworks/R.framework/Versions/Current/Resources/bin/R CMD INSTALL consensusSeekeR ### ############################################################################## ############################################################################## * installing to library ‘/Library/Frameworks/R.framework/Versions/4.0/Resources/library’ * installing *source* package ‘consensusSeekeR’ ... ** using staged installation ** R ** data ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (consensusSeekeR)
consensusSeekeR.Rcheck/tests/runTests.Rout
R Under development (unstable) (2019-12-14 r77572) -- "Unsuffered Consequences"
Copyright (C) 2019 The R Foundation for Statistical Computing
Platform: x86_64-apple-darwin15.6.0 (64-bit)
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Type 'license()' or 'licence()' for distribution details.
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> ## Run all tests present in the package
> BiocGenerics:::testPackage("consensusSeekeR")
Attaching package: 'BiocGenerics'
The following objects are masked from 'package:parallel':
clusterApply, clusterApplyLB, clusterCall, clusterEvalQ,
clusterExport, clusterMap, parApply, parCapply, parLapply,
parLapplyLB, parRapply, parSapply, parSapplyLB
The following objects are masked from 'package:stats':
IQR, mad, sd, var, xtabs
The following objects are masked from 'package:base':
Filter, Find, Map, Position, Reduce, anyDuplicated, append,
as.data.frame, basename, cbind, colnames, dirname, do.call,
duplicated, eval, evalq, get, grep, grepl, intersect, is.unsorted,
lapply, mapply, match, mget, order, paste, pmax, pmax.int, pmin,
pmin.int, rank, rbind, rownames, sapply, setdiff, sort, table,
tapply, union, unique, unsplit, which, which.max, which.min
Attaching package: 'S4Vectors'
The following object is masked from 'package:base':
expand.grid
RUNIT TEST PROTOCOL -- Thu Jan 16 03:19:05 2020
***********************************************
Number of test functions: 56
Number of errors: 0
Number of failures: 0
1 Test Suite :
consensusSeekeR RUnit Tests - 56 test functions, 0 errors, 0 failures
Number of test functions: 56
Number of errors: 0
Number of failures: 0
>
> proc.time()
user system elapsed
26.997 1.865 28.918
consensusSeekeR.Rcheck/consensusSeekeR-Ex.timings
| name | user | system | elapsed | |
| A549_CTCF_MYJ_NarrowPeaks_partial | 1.915 | 0.177 | 2.093 | |
| A549_CTCF_MYJ_Peaks_partial | 1.657 | 0.029 | 1.720 | |
| A549_CTCF_MYN_NarrowPeaks_partial | 0.845 | 0.101 | 0.946 | |
| A549_CTCF_MYN_Peaks_partial | 1.193 | 0.216 | 1.501 | |
| A549_FOSL2_01_NarrowPeaks_partial | 0.694 | 0.050 | 0.764 | |
| A549_FOSL2_01_Peaks_partial | 0.841 | 0.031 | 0.966 | |
| A549_FOXA1_01_NarrowPeaks_partial | 0.867 | 0.022 | 0.906 | |
| A549_FOXA1_01_Peaks_partial | 1.271 | 0.032 | 1.400 | |
| A549_NR3C1_CFQ_NarrowPeaks_partial | 0.761 | 0.022 | 0.801 | |
| A549_NR3C1_CFQ_Peaks_partial | 1.004 | 0.044 | 1.137 | |
| A549_NR3C1_CFR_NarrowPeaks_partial | 0.708 | 0.022 | 0.746 | |
| A549_NR3C1_CFR_Peaks_partial | 0.741 | 0.020 | 0.778 | |
| A549_NR3C1_CFS_NarrowPeaks_partial | 1.692 | 0.034 | 1.792 | |
| A549_NR3C1_CFS_Peaks_partial | 1.683 | 0.035 | 1.719 | |
| NOrMAL_nucleosome_positions | 1.398 | 0.033 | 1.431 | |
| NOrMAL_nucleosome_ranges | 1.256 | 0.037 | 1.293 | |
| NucPosSimulator_nucleosome_positions | 1.328 | 0.040 | 1.368 | |
| NucPosSimulator_nucleosome_ranges | 1.367 | 0.032 | 1.400 | |
| PING_nucleosome_positions | 0.877 | 0.034 | 0.912 | |
| PING_nucleosome_ranges | 0.797 | 0.033 | 0.830 | |
| findConsensusPeakRegions | 1.582 | 0.028 | 1.685 | |
| findConsensusPeakRegionsValidation | 0.176 | 0.016 | 0.192 | |
| readNarrowPeakFile | 0.159 | 0.003 | 0.164 | |