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BUILD BIN report for cola on tokay2

This page was generated on 2020-10-17 11:56:21 -0400 (Sat, 17 Oct 2020).

TO THE DEVELOPERS/MAINTAINERS OF THE cola PACKAGE: Please make sure to use the following settings in order to reproduce any error or warning you see on this page.
Package 351/1905HostnameOS / ArchINSTALLBUILDCHECKBUILD BIN
cola 1.4.1
Zuguang Gu
Snapshot Date: 2020-10-16 14:40:19 -0400 (Fri, 16 Oct 2020)
URL: https://git.bioconductor.org/packages/cola
Branch: RELEASE_3_11
Last Commit: 182e341
Last Changed Date: 2020-05-03 07:59:28 -0400 (Sun, 03 May 2020)
malbec2 Linux (Ubuntu 18.04.4 LTS) / x86_64  OK  OK  OK UNNEEDED, same version exists in internal repository
tokay2 Windows Server 2012 R2 Standard / x64  OK  OK  OK [ OK ]UNNEEDED, same version exists in internal repository
machv2 macOS 10.14.6 Mojave / x86_64  OK  OK  OK  OK UNNEEDED, same version exists in internal repository

Summary

Package: cola
Version: 1.4.1
Command: rm -rf cola.buildbin-libdir && mkdir cola.buildbin-libdir && C:\Users\biocbuild\bbs-3.11-bioc\R\bin\R.exe CMD INSTALL --merge-multiarch --build --library=cola.buildbin-libdir cola_1.4.1.tar.gz
StartedAt: 2020-10-17 10:10:33 -0400 (Sat, 17 Oct 2020)
EndedAt: 2020-10-17 10:12:03 -0400 (Sat, 17 Oct 2020)
EllapsedTime: 89.3 seconds
RetCode: 0
Status:  OK  
PackageFile: cola_1.4.1.zip
PackageFileSize: 4.267 MiB

Command output

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###
### Running command:
###
###   rm -rf cola.buildbin-libdir && mkdir cola.buildbin-libdir && C:\Users\biocbuild\bbs-3.11-bioc\R\bin\R.exe CMD INSTALL --merge-multiarch --build --library=cola.buildbin-libdir cola_1.4.1.tar.gz
###
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install for i386

* installing *source* package 'cola' ...
** using staged installation
** libs
"C:/rtools40/mingw32/bin/"g++ -std=gnu++11  -I"C:/Users/BIOCBU~1/BBS-3~1.11-/R/include" -DNDEBUG  -I'C:/Users/biocbuild/bbs-3.11-bioc/R/library/Rcpp/include'   -I"C:/extsoft/include"     -O2 -Wall  -mfpmath=sse -msse2 -mstackrealign -c RcppExports.cpp -o RcppExports.o
"C:/rtools40/mingw32/bin/"g++ -std=gnu++11  -I"C:/Users/BIOCBU~1/BBS-3~1.11-/R/include" -DNDEBUG  -I'C:/Users/biocbuild/bbs-3.11-bioc/R/library/Rcpp/include'   -I"C:/extsoft/include"     -O2 -Wall  -mfpmath=sse -msse2 -mstackrealign -c cal_consensus_mat.cpp -o cal_consensus_mat.o
"C:/rtools40/mingw32/bin/"g++ -std=gnu++11  -I"C:/Users/BIOCBU~1/BBS-3~1.11-/R/include" -DNDEBUG  -I'C:/Users/biocbuild/bbs-3.11-bioc/R/library/Rcpp/include'   -I"C:/extsoft/include"     -O2 -Wall  -mfpmath=sse -msse2 -mstackrealign -c pdist.cpp -o pdist.o
C:/rtools40/mingw32/bin/g++ -std=gnu++11 -shared -s -static-libgcc -o cola.dll tmp.def RcppExports.o cal_consensus_mat.o pdist.o -LC:/extsoft/lib/i386 -LC:/extsoft/lib -LC:/Users/BIOCBU~1/BBS-3~1.11-/R/bin/i386 -lR
installing to C:/Users/biocbuild/bbs-3.11-bioc/meat/cola.buildbin-libdir/00LOCK-cola/00new/cola/libs/i386
** R
** data
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
  converting help for package 'cola'
    finding HTML links ... done
    ATC                                     html  
    ConsensusPartition-class                html  
    ConsensusPartitionList-class            html  
    Extract.ConsensusPartitionList          html  
    ExtractExtract.ConsensusPartitionList   html  
    FCC                                     html  
    PAC                                     html  
    aPAC                                    html  
    adjust_matrix                           html  
    adjust_outlier                          html  
    all_partition_methods                   html  
    all_top_value_methods                   html  
    cola                                    html  
    cola_opt                                html  
    cola_report-ConsensusPartition-method   html  
    cola_report-ConsensusPartitionList-method
                                            html  
    cola_report-dispatch                    html  
    cola_rl                                 html  
    collect_classes-ConsensusPartition-method
                                            html  
    collect_classes-ConsensusPartitionList-method
                                            html  
    collect_classes-dispatch                html  
    collect_plots-ConsensusPartition-method
                                            html  
    collect_plots-ConsensusPartitionList-method
                                            html  
    collect_plots-dispatch                  html  
    collect_stats-ConsensusPartition-method
                                            html  
    collect_stats-ConsensusPartitionList-method
                                            html  
    collect_stats-dispatch                  html  
    colnames-ConsensusPartition-method      html  
    colnames-ConsensusPartitionList-method
                                            html  
    colnames-dispatch                       html  
    compare_signatures-ConsensusPartition-method
                                            html  
    concordance                             html  
    consensus_heatmap-ConsensusPartition-method
                                            html  
    consensus_partition                     html  
    correspond_between_rankings             html  
    correspond_between_two_rankings         html  
    dim.ConsensusPartition                  html  
    dim.ConsensusPartitionList              html  
    dimension_reduction-ConsensusPartition-method
                                            html  
    dimension_reduction-dispatch            html  
    dimension_reduction-matrix-method       html  
    find_best_km                            html  
    functional_enrichment-ANY-method        html  
    functional_enrichment-ConsensusPartition-method
                                            html  
    functional_enrichment-ConsensusPartitionList-method
                                            html  
    functional_enrichment-dispatch          html  
    get_anno-ConsensusPartition-method      html  
    get_anno-ConsensusPartitionList-method
                                            html  
    get_anno-dispatch                       html  
    get_anno_col-ConsensusPartition-method
                                            html  
    get_anno_col-ConsensusPartitionList-method
                                            html  
    get_anno_col-dispatch                   html  
    get_classes-ConsensusPartition-method   html  
    get_classes-ConsensusPartitionList-method
                                            html  
    get_classes-dispatch                    html  
    get_consensus-ConsensusPartition-method
                                            html  
    get_matrix-ConsensusPartition-method    html  
    get_matrix-ConsensusPartitionList-method
                                            html  
    get_matrix-dispatch                     html  
    get_membership-ConsensusPartition-method
                                            html  
    get_membership-ConsensusPartitionList-method
                                            html  
    get_membership-dispatch                 html  
    get_param-ConsensusPartition-method     html  
    get_signatures-ConsensusPartition-method
                                            html  
    get_stats-ConsensusPartition-method     html  
    get_stats-ConsensusPartitionList-method
                                            html  
    get_stats-dispatch                      html  
    is_best_k-ConsensusPartition-method     html  
    is_best_k-ConsensusPartitionList-method
                                            html  
    is_best_k-dispatch                      html  
    is_stable_k-ConsensusPartition-method   html  
    is_stable_k-ConsensusPartitionList-method
                                            html  
    is_stable_k-dispatch                    html  
    knitr_add_tab_item                      html  
    knitr_insert_tabs                       html  
    map_to_entrez_id                        html  
    membership_heatmap-ConsensusPartition-method
                                            html  
    ncol-ConsensusPartition-method          html  
    ncol-ConsensusPartitionList-method      html  
    ncol-dispatch                           html  
    nrow-ConsensusPartition-method          html  
    nrow-ConsensusPartitionList-method      html  
    nrow-dispatch                           html  
    plot_ecdf-ConsensusPartition-method     html  
    recalc_stats                            html  
    register_NMF                            html  
    register_SOM                            html  
    register_partition_methods              html  
    register_top_value_methods              html  
    relabel_class                           html  
    remove_partition_methods                html  
    remove_top_value_methods                html  
    rownames-ConsensusPartition-method      html  
    rownames-ConsensusPartitionList-method
                                            html  
    rownames-dispatch                       html  
    run_all_consensus_partition_methods     html  
    select_partition_number-ConsensusPartition-method
                                            html  
    show-ConsensusPartition-method          html  
    show-ConsensusPartitionList-method      html  
    show-dispatch                           html  
    submit_to_david                         html  
    suggest_best_k-ConsensusPartition-method
                                            html  
    suggest_best_k-ConsensusPartitionList-method
                                            html  
    suggest_best_k-dispatch                 html  
    test_between_factors                    html  
    test_to_known_factors-ConsensusPartition-method
                                            html  
    test_to_known_factors-ConsensusPartitionList-method
                                            html  
    test_to_known_factors-dispatch          html  
    top_elements_overlap                    html  
    top_rows_heatmap-ConsensusPartitionList-method
                                            html  
    top_rows_heatmap-dispatch               html  
    top_rows_heatmap-matrix-method          html  
    top_rows_overlap-ConsensusPartitionList-method
                                            html  
    top_rows_overlap-dispatch               html  
    top_rows_overlap-matrix-method          html  
** building package indices
** installing vignettes
** testing if installed package can be loaded from temporary location
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path

install for x64

* installing *source* package 'cola' ...
** libs
"C:/rtools40/mingw64/bin/"g++ -std=gnu++11  -I"C:/Users/BIOCBU~1/BBS-3~1.11-/R/include" -DNDEBUG  -I'C:/Users/biocbuild/bbs-3.11-bioc/R/library/Rcpp/include'   -I"C:/extsoft/include"     -O2 -Wall  -mfpmath=sse -msse2 -mstackrealign -c RcppExports.cpp -o RcppExports.o
"C:/rtools40/mingw64/bin/"g++ -std=gnu++11  -I"C:/Users/BIOCBU~1/BBS-3~1.11-/R/include" -DNDEBUG  -I'C:/Users/biocbuild/bbs-3.11-bioc/R/library/Rcpp/include'   -I"C:/extsoft/include"     -O2 -Wall  -mfpmath=sse -msse2 -mstackrealign -c cal_consensus_mat.cpp -o cal_consensus_mat.o
"C:/rtools40/mingw64/bin/"g++ -std=gnu++11  -I"C:/Users/BIOCBU~1/BBS-3~1.11-/R/include" -DNDEBUG  -I'C:/Users/biocbuild/bbs-3.11-bioc/R/library/Rcpp/include'   -I"C:/extsoft/include"     -O2 -Wall  -mfpmath=sse -msse2 -mstackrealign -c pdist.cpp -o pdist.o
C:/rtools40/mingw64/bin/g++ -std=gnu++11 -shared -s -static-libgcc -o cola.dll tmp.def RcppExports.o cal_consensus_mat.o pdist.o -LC:/extsoft/lib/x64 -LC:/extsoft/lib -LC:/Users/BIOCBU~1/BBS-3~1.11-/R/bin/x64 -lR
installing to C:/Users/biocbuild/bbs-3.11-bioc/meat/cola.buildbin-libdir/cola/libs/x64
** testing if installed package can be loaded
* MD5 sums
packaged installation of 'cola' as cola_1.4.1.zip
* DONE (cola)