Package: ceRNAnetsim

Version: 0.99.24

Command: /Library/Frameworks/R.framework/Versions/Current/Resources/bin/R CMD check --install=check:ceRNAnetsim.install-out.txt --library=/Library/Frameworks/R.framework/Versions/Current/Resources/library --no-vignettes --timings ceRNAnetsim_0.99.24.tar.gz

StartedAt: 2020-01-16 02:39:14 -0500 (Thu, 16 Jan 2020)

EndedAt: 2020-01-16 02:41:53 -0500 (Thu, 16 Jan 2020)

EllapsedTime: 159.2 seconds

RetCode: 0

Status:  OK

CheckDir: ceRNAnetsim.Rcheck

Warnings: 0

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### Running command:
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###   /Library/Frameworks/R.framework/Versions/Current/Resources/bin/R CMD check --install=check:ceRNAnetsim.install-out.txt --library=/Library/Frameworks/R.framework/Versions/Current/Resources/library --no-vignettes --timings ceRNAnetsim_0.99.24.tar.gz
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* using log directory ‘/Users/biocbuild/bbs-3.11-bioc/meat/ceRNAnetsim.Rcheck’
* using R Under development (unstable) (2019-12-14 r77572)
* using platform: x86_64-apple-darwin15.6.0 (64-bit)
* using session charset: UTF-8
* using option ‘--no-vignettes’
* checking for file ‘ceRNAnetsim/DESCRIPTION’ ... OK
* checking extension type ... Package
* this is package ‘ceRNAnetsim’ version ‘0.99.24’
* package encoding: UTF-8
* checking package namespace information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking if there is a namespace ... OK
* checking for hidden files and directories ... OK
* checking for portable file names ... OK
* checking for sufficient/correct file permissions ... OK
* checking whether package ‘ceRNAnetsim’ can be installed ... OK
* checking installed package size ... OK
* checking package directory ... OK
* checking ‘build’ directory ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking for left-over files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking R files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* checking whether the package can be loaded ... OK
* checking whether the package can be loaded with stated dependencies ... OK
* checking whether the package can be unloaded cleanly ... OK
* checking whether the namespace can be loaded with stated dependencies ... OK
* checking whether the namespace can be unloaded cleanly ... OK
* checking dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... OK
* checking Rd files ... OK
* checking Rd metadata ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking contents of ‘data’ directory ... OK
* checking data for non-ASCII characters ... OK
* checking data for ASCII and uncompressed saves ... OK
* checking files in ‘vignettes’ ... OK
* checking examples ... OK
Examples with CPU (user + system) or elapsed time > 5s
                         user system elapsed
simulate_vis           11.523   0.17  11.720
find_node_perturbation 10.934   0.13  11.067
* checking for unstated dependencies in ‘tests’ ... OK
* checking tests ...
  Running ‘testthat.R’
 OK
* checking for unstated dependencies in vignettes ... OK
* checking package vignettes in ‘inst/doc’ ... OK
* checking running R code from vignettes ... SKIPPED
* checking re-building of vignette outputs ... SKIPPED
* checking PDF version of manual ... OK
* DONE

Status: OK

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### Running command:
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###   /Library/Frameworks/R.framework/Versions/Current/Resources/bin/R CMD INSTALL ceRNAnetsim
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* installing to library ‘/Library/Frameworks/R.framework/Versions/4.0/Resources/library’
* installing *source* package ‘ceRNAnetsim’ ...
** using staged installation
** R
** data
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
** building package indices
** installing vignettes
** testing if installed package can be loaded from temporary location
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path
* DONE (ceRNAnetsim)

R Under development (unstable) (2019-12-14 r77572) -- "Unsuffered Consequences"
Copyright (C) 2019 The R Foundation for Statistical Computing
Platform: x86_64-apple-darwin15.6.0 (64-bit)

R is free software and comes with ABSOLUTELY NO WARRANTY.
You are welcome to redistribute it under certain conditions.
Type 'license()' or 'licence()' for distribution details.

R is a collaborative project with many contributors.
Type 'contributors()' for more information and
'citation()' on how to cite R or R packages in publications.

Type 'demo()' for some demos, 'help()' for on-line help, or
'help.start()' for an HTML browser interface to help.
Type 'q()' to quit R.

> library(testthat)
> library(ceRNAnetsim)
Loading required package: dplyr

Attaching package: 'dplyr'

The following object is masked from 'package:testthat':

    matches

The following objects are masked from 'package:stats':

    filter, lag

The following objects are masked from 'package:base':

    intersect, setdiff, setequal, union

Loading required package: tidygraph

Attaching package: 'tidygraph'

The following object is masked from 'package:testthat':

    matches

The following object is masked from 'package:stats':

    filter


Attaching package: 'ceRNAnetsim'

The following object is masked from 'package:stats':

    simulate

> 
> 
> test_check("ceRNAnetsim")
══ testthat results  ═══════════════════════════════════════════════════════════
[ OK: 30 | SKIPPED: 0 | WARNINGS: 35 | FAILED: 0 ]
> 
> proc.time()
   user  system elapsed 
 30.712   0.825  31.777 

name	user	system	elapsed
calc_perturbation	1.410	0.035	1.445
find_iteration	1.470	0.046	1.516
find_node_perturbation	10.934	0.130	11.067
priming_graph	0.505	0.007	0.512
simulate	1.080	0.013	1.094
simulate_vis	11.523	0.170	11.720
update_how	0.939	0.009	0.947
update_nodes	0.303	0.007	0.310
update_variables	0.283	0.006	0.289
vis_graph	1.846	0.012	2.079