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INSTALL report for Vega on celaya2

This page was generated on 2020-01-16 13:33:04 -0500 (Thu, 16 Jan 2020).

Package 1785/1818HostnameOS / ArchINSTALLBUILDCHECKBUILD BIN
Vega 1.35.0
Sandro Morganella
Snapshot Date: 2020-01-15 16:46:30 -0500 (Wed, 15 Jan 2020)
URL: https://git.bioconductor.org/packages/Vega
Branch: master
Last Commit: 5ffbe24
Last Changed Date: 2019-10-29 13:35:21 -0500 (Tue, 29 Oct 2019)
malbec2 Linux (Ubuntu 18.04.3 LTS) / x86_64  OK  OK  OK UNNEEDED, same version exists in internal repository
tokay2 Windows Server 2012 R2 Standard / x64  OK  OK  OK  NA 
celaya2 OS X 10.11.6 El Capitan / x86_64 [ OK ] OK  WARNINGS  OK 

Summary

Package: Vega
Version: 1.35.0
Command: /Library/Frameworks/R.framework/Versions/Current/Resources/bin/R CMD INSTALL Vega
StartedAt: 2020-01-15 18:04:13 -0500 (Wed, 15 Jan 2020)
EndedAt: 2020-01-15 18:04:30 -0500 (Wed, 15 Jan 2020)
EllapsedTime: 16.9 seconds
RetCode: 0
Status:  OK 

Command output

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###
### Running command:
###
###   /Library/Frameworks/R.framework/Versions/Current/Resources/bin/R CMD INSTALL Vega
###
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* installing to library ‘/Library/Frameworks/R.framework/Versions/4.0/Resources/library’
* installing *source* package ‘Vega’ ...
** using staged installation
** libs
clang -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG   -isysroot /Library/Developer/CommandLineTools/SDKs/MacOSX.sdk -I/usr/local/include   -fPIC  -Wall -g -O2  -c vega.c -o vega.o
vega.c:369:20: warning: using integer absolute value function 'abs' when argument is of floating point type [-Wabsolute-value]
        lambda_gradient = abs(lambda);
                          ^
vega.c:369:20: note: use function 'fabs' instead
        lambda_gradient = abs(lambda);
                          ^~~
                          fabs
vega.c:348:68: warning: unused variable 'tmp_lambda2' [-Wunused-variable]
        double lambda, lambda_gradient, stop_lambda_gradient, tmp_lambda, tmp_lambda2;
                                                                          ^
vega.c:347:6: warning: unused variable 'index' [-Wunused-variable]
        int index;
            ^
vega.c:355:13: warning: unused variable 'maxptr' [-Wunused-variable]
        node max, *maxptr, tmp_node;
                   ^
vega.c:560:64: warning: unused variable 'next_mean' [-Wunused-variable]
        double lambda, first_term, second_term, prev_mean, curr_mean, next_mean;
                                                                      ^
5 warnings generated.
clang -dynamiclib -Wl,-headerpad_max_install_names -undefined dynamic_lookup -single_module -multiply_defined suppress -L/Library/Frameworks/R.framework/Resources/lib -L/usr/local/lib -o Vega.so vega.o -F/Library/Frameworks/R.framework/.. -framework R -Wl,-framework -Wl,CoreFoundation
installing to /Library/Frameworks/R.framework/Versions/4.0/Resources/library/00LOCK-Vega/00new/Vega/libs
** R
** data
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
** building package indices
** installing vignettes
** testing if installed package can be loaded from temporary location
** checking absolute paths in shared objects and dynamic libraries
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path
* DONE (Vega)