VariantExperiment 1.1.0
Qian Liu
| Snapshot Date: 2020-01-15 16:46:30 -0500 (Wed, 15 Jan 2020) |
| URL: https://git.bioconductor.org/packages/VariantExperiment |
| Branch: master |
| Last Commit: 71a84c0 |
| Last Changed Date: 2019-10-29 13:43:38 -0500 (Tue, 29 Oct 2019) |
| malbec2 | Linux (Ubuntu 18.04.3 LTS) / x86_64 | OK | ERROR | skipped | | |
| tokay2 | Windows Server 2012 R2 Standard / x64 | OK | ERROR | skipped | skipped | |
| celaya2 | OS X 10.11.6 El Capitan / x86_64 | OK | [ ERROR ] | skipped | skipped | |
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### Running command:
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### /Library/Frameworks/R.framework/Versions/Current/Resources/bin/R CMD build --keep-empty-dirs --no-resave-data VariantExperiment
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* checking for file ‘VariantExperiment/DESCRIPTION’ ... OK
* preparing ‘VariantExperiment’:
* checking DESCRIPTION meta-information ... OK
* installing the package to build vignettes
* creating vignettes ... ERROR
--- re-building ‘VariantExperiment-class.Rmd’ using rmarkdown
Loading required package: S4Vectors
Loading required package: stats4
Loading required package: BiocGenerics
Loading required package: parallel
Attaching package: 'BiocGenerics'
The following objects are masked from 'package:parallel':
clusterApply, clusterApplyLB, clusterCall, clusterEvalQ,
clusterExport, clusterMap, parApply, parCapply, parLapply,
parLapplyLB, parRapply, parSapply, parSapplyLB
The following objects are masked from 'package:stats':
IQR, mad, sd, var, xtabs
The following objects are masked from 'package:base':
Filter, Find, Map, Position, Reduce, anyDuplicated, append,
as.data.frame, basename, cbind, colnames, dirname, do.call,
duplicated, eval, evalq, get, grep, grepl, intersect, is.unsorted,
lapply, mapply, match, mget, order, paste, pmax, pmax.int, pmin,
pmin.int, rank, rbind, rownames, sapply, setdiff, sort, table,
tapply, union, unique, unsplit, which, which.max, which.min
Attaching package: 'S4Vectors'
The following object is masked from 'package:base':
expand.grid
Loading required package: SummarizedExperiment
Loading required package: GenomicRanges
Loading required package: IRanges
Loading required package: GenomeInfoDb
Loading required package: Biobase
Welcome to Bioconductor
Vignettes contain introductory material; view with
'browseVignettes()'. To cite Bioconductor, see
'citation("Biobase")', and for packages 'citation("pkgname")'.
Loading required package: DelayedArray
Loading required package: matrixStats
Attaching package: 'matrixStats'
The following objects are masked from 'package:Biobase':
anyMissing, rowMedians
Loading required package: BiocParallel
Attaching package: 'DelayedArray'
The following objects are masked from 'package:matrixStats':
colMaxs, colMins, colRanges, rowMaxs, rowMins, rowRanges
The following objects are masked from 'package:base':
aperm, apply, rowsum
Loading required package: GDSArray
Loading required package: gdsfmt
Attaching package: 'GDSArray'
The following object is masked from 'package:utils':
example
Loading required package: DelayedDataFrame
Quitting from lines 144-146 (VariantExperiment-class.Rmd)
Error: processing vignette 'VariantExperiment-class.Rmd' failed with diagnostics:
cannot coerce class "list" to a DataFrame
--- failed re-building ‘VariantExperiment-class.Rmd’
--- re-building ‘VariantExperiment-methods.Rmd’ using rmarkdown
Quitting from lines 68-71 (VariantExperiment-methods.Rmd)
Error: processing vignette 'VariantExperiment-methods.Rmd' failed with diagnostics:
cannot coerce class "list" to a DataFrame
--- failed re-building ‘VariantExperiment-methods.Rmd’
SUMMARY: processing the following files failed:
‘VariantExperiment-class.Rmd’ ‘VariantExperiment-methods.Rmd’
Error: Vignette re-building failed.
Execution halted