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INSTALL report for SwathXtend on tokay2

This page was generated on 2020-10-17 11:57:54 -0400 (Sat, 17 Oct 2020).

TO THE DEVELOPERS/MAINTAINERS OF THE SwathXtend PACKAGE: Please make sure to use the following settings in order to reproduce any error or warning you see on this page.
Package 1766/1905HostnameOS / ArchINSTALLBUILDCHECKBUILD BIN
SwathXtend 2.10.0
Jemma Wu
Snapshot Date: 2020-10-16 14:40:19 -0400 (Fri, 16 Oct 2020)
URL: https://git.bioconductor.org/packages/SwathXtend
Branch: RELEASE_3_11
Last Commit: ef6a4da
Last Changed Date: 2020-04-27 14:55:34 -0400 (Mon, 27 Apr 2020)
malbec2 Linux (Ubuntu 18.04.4 LTS) / x86_64  OK  OK  WARNINGS UNNEEDED, same version exists in internal repository
tokay2 Windows Server 2012 R2 Standard / x64 [ OK ] OK  WARNINGS  NA 
machv2 macOS 10.14.6 Mojave / x86_64  OK  OK  WARNINGS  OK UNNEEDED, same version exists in internal repository

Summary

Package: SwathXtend
Version: 2.10.0
Command: C:\cygwin\bin\curl.exe -O https://malbec2.bioconductor.org/BBS/3.11/bioc/src/contrib/SwathXtend_2.10.0.tar.gz && rm -rf SwathXtend.buildbin-libdir && mkdir SwathXtend.buildbin-libdir && C:\Users\biocbuild\bbs-3.11-bioc\R\bin\R.exe CMD INSTALL --merge-multiarch --build --library=SwathXtend.buildbin-libdir SwathXtend_2.10.0.tar.gz && C:\Users\biocbuild\bbs-3.11-bioc\R\bin\R.exe CMD INSTALL SwathXtend_2.10.0.zip && rm SwathXtend_2.10.0.tar.gz SwathXtend_2.10.0.zip
StartedAt: 2020-10-16 17:51:31 -0400 (Fri, 16 Oct 2020)
EndedAt: 2020-10-16 17:55:26 -0400 (Fri, 16 Oct 2020)
EllapsedTime: 235.2 seconds
RetCode: 0
Status:  OK  

Command output

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###
### Running command:
###
###   C:\cygwin\bin\curl.exe -O https://malbec2.bioconductor.org/BBS/3.11/bioc/src/contrib/SwathXtend_2.10.0.tar.gz && rm -rf SwathXtend.buildbin-libdir && mkdir SwathXtend.buildbin-libdir && C:\Users\biocbuild\bbs-3.11-bioc\R\bin\R.exe CMD INSTALL --merge-multiarch --build --library=SwathXtend.buildbin-libdir SwathXtend_2.10.0.tar.gz && C:\Users\biocbuild\bbs-3.11-bioc\R\bin\R.exe CMD INSTALL SwathXtend_2.10.0.zip && rm SwathXtend_2.10.0.tar.gz SwathXtend_2.10.0.zip
###
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  % Total    % Received % Xferd  Average Speed   Time    Time     Time  Current
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  0     0    0     0    0     0      0      0 --:--:-- --:--:-- --:--:--     0
 18  346M   18 65.3M    0     0   100M      0  0:00:03 --:--:--  0:00:03  101M
 47  346M   47  162M    0     0  98.7M      0  0:00:03  0:00:01  0:00:02 99.0M
 74  346M   74  257M    0     0  97.3M      0  0:00:03  0:00:02  0:00:01 97.5M
 87  346M   87  303M    0     0  83.0M      0  0:00:04  0:00:03  0:00:01 83.1M
 89  346M   89  311M    0     0  65.2M      0  0:00:05  0:00:04  0:00:01 65.3M
 97  346M   97  337M    0     0  59.4M      0  0:00:05  0:00:05 --:--:-- 54.1M
100  346M  100  346M    0     0  59.2M      0  0:00:05  0:00:05 --:--:-- 43.7M

install for i386

* installing *source* package 'SwathXtend' ...
** using staged installation
** R
** data
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
  converting help for package 'SwathXtend'
    finding HTML links ... done
    applyttest                              html  
    applyttestPep                           html  
    buildSpectraLibPair                     html  
    canonicalFormat                         html  
    checkQuality                            html  
    cleanLib                                html  
    coverage                                html  
    cv                                      html  
    fdr.crit                                html  
    getFdrBins                              html  
    ionCorGS                                html  
    medianNorm                              html  
    mlr                                     html  
    mlrGroup                                html  
    mlrrep                                  html  
    outputLib                               html  
    plotAll                                 html  
    plotDensities                           html  
    plotErrorBarsLines                      html  
    plotRIICor                              html  
    plotRTCor                               html  
    plotRTResd                              html  
    plotRelativeDensities                   html  
    quantification.accuracy                 html  
    readLibFile                             html  
    reliabilityCheckLibrary                 html  
    reliabilityCheckSwath                   html  
    swath.means                             html  
** building package indices
** installing vignettes
** testing if installed package can be loaded from temporary location
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path

install for x64

* installing *source* package 'SwathXtend' ...
** testing if installed package can be loaded
* MD5 sums
packaged installation of 'SwathXtend' as SwathXtend_2.10.0.zip
* DONE (SwathXtend)
* installing to library 'C:/Users/biocbuild/bbs-3.11-bioc/R/library'
package 'SwathXtend' successfully unpacked and MD5 sums checked