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INSTALL report for SummarizedBenchmark on tokay2

This page was generated on 2020-10-17 11:57:54 -0400 (Sat, 17 Oct 2020).

TO THE DEVELOPERS/MAINTAINERS OF THE SummarizedBenchmark PACKAGE: Please make sure to use the following settings in order to reproduce any error or warning you see on this page.
Package 1757/1905HostnameOS / ArchINSTALLBUILDCHECKBUILD BIN
SummarizedBenchmark 2.6.0
Patrick Kimes
Snapshot Date: 2020-10-16 14:40:19 -0400 (Fri, 16 Oct 2020)
URL: https://git.bioconductor.org/packages/SummarizedBenchmark
Branch: RELEASE_3_11
Last Commit: 7d6f875
Last Changed Date: 2020-04-27 15:14:45 -0400 (Mon, 27 Apr 2020)
malbec2 Linux (Ubuntu 18.04.4 LTS) / x86_64  OK  OK  OK UNNEEDED, same version exists in internal repository
tokay2 Windows Server 2012 R2 Standard / x64 [ OK ] OK  WARNINGS  NA 
machv2 macOS 10.14.6 Mojave / x86_64  OK  OK  OK  OK UNNEEDED, same version exists in internal repository

Summary

Package: SummarizedBenchmark
Version: 2.6.0
Command: C:\cygwin\bin\curl.exe -O https://malbec2.bioconductor.org/BBS/3.11/bioc/src/contrib/SummarizedBenchmark_2.6.0.tar.gz && rm -rf SummarizedBenchmark.buildbin-libdir && mkdir SummarizedBenchmark.buildbin-libdir && C:\Users\biocbuild\bbs-3.11-bioc\R\bin\R.exe CMD INSTALL --merge-multiarch --build --library=SummarizedBenchmark.buildbin-libdir SummarizedBenchmark_2.6.0.tar.gz && C:\Users\biocbuild\bbs-3.11-bioc\R\bin\R.exe CMD INSTALL SummarizedBenchmark_2.6.0.zip && rm SummarizedBenchmark_2.6.0.tar.gz SummarizedBenchmark_2.6.0.zip
StartedAt: 2020-10-16 18:20:54 -0400 (Fri, 16 Oct 2020)
EndedAt: 2020-10-16 18:22:06 -0400 (Fri, 16 Oct 2020)
EllapsedTime: 72.5 seconds
RetCode: 0
Status:  OK  

Command output

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### Running command:
###
###   C:\cygwin\bin\curl.exe -O https://malbec2.bioconductor.org/BBS/3.11/bioc/src/contrib/SummarizedBenchmark_2.6.0.tar.gz && rm -rf SummarizedBenchmark.buildbin-libdir && mkdir SummarizedBenchmark.buildbin-libdir && C:\Users\biocbuild\bbs-3.11-bioc\R\bin\R.exe CMD INSTALL --merge-multiarch --build --library=SummarizedBenchmark.buildbin-libdir SummarizedBenchmark_2.6.0.tar.gz && C:\Users\biocbuild\bbs-3.11-bioc\R\bin\R.exe CMD INSTALL SummarizedBenchmark_2.6.0.zip && rm SummarizedBenchmark_2.6.0.tar.gz SummarizedBenchmark_2.6.0.zip
###
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  % Total    % Received % Xferd  Average Speed   Time    Time     Time  Current
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  0     0    0     0    0     0      0      0 --:--:-- --:--:-- --:--:--     0
100 5648k  100 5648k    0     0  43.6M      0 --:--:-- --:--:-- --:--:-- 45.9M

install for i386

* installing *source* package 'SummarizedBenchmark' ...
** using staged installation
** R
** data
*** moving datasets to lazyload DB
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
  converting help for package 'SummarizedBenchmark'
    finding HTML links ... done
    BDData-class                            html  
    BDData-setter                           html  
    BDData-show                             html  
    BDData                                  html  
    BDMethod-class                          html  
    BDMethod-setter                         html  
    BDMethod-show                           html  
    BDMethod                                html  
    BDMethodList-class                      html  
    BDMethodList-setter                     html  
    BDMethodList-show                       html  
    BDMethodList                            html  
    BenchDesign-class                       html  
    BenchDesign-show                        html  
    BenchDesign                             html  
    SummarizedBenchmark-class               html  
    finding level-2 HTML links ... done

    SummarizedBenchmark                     html  
    addMethod                               html  
Rd warning: C:/Users/biocbuild/bbs-3.11-bioc/tmpdir/RtmpCy8yng/R.INSTALL14ec22c65d95/SummarizedBenchmark/man/addMethod.Rd:47: file link 'quotation' in package 'rlang' does not exist and so has been treated as a topic
Rd warning: C:/Users/biocbuild/bbs-3.11-bioc/tmpdir/RtmpCy8yng/R.INSTALL14ec22c65d95/SummarizedBenchmark/man/addMethod.Rd:17: file link 'quotation' in package 'rlang' does not exist and so has been treated as a topic
Rd warning: C:/Users/biocbuild/bbs-3.11-bioc/tmpdir/RtmpCy8yng/R.INSTALL14ec22c65d95/SummarizedBenchmark/man/addMethod.Rd:76: file link 'quotation' in package 'rlang' does not exist and so has been treated as a topic
    addPerformanceMetric                    html  
    allSB                                   html  
    assayNames-setter                       html  
    availableMetrics                        html  
    buildBench                              html  
    compareBDData                           html  
    compareBDMethod                         html  
    compareBenchDesigns                     html  
    dropMethod                              html  
    estimateMetrics                         html  
    expandMethod                            html  
    groundTruths-setter                     html  
    groundTruths                            html  
    hashBDData                              html  
    mcols-setter                            html  
    modifyMethod                            html  
Rd warning: C:/Users/biocbuild/bbs-3.11-bioc/tmpdir/RtmpCy8yng/R.INSTALL14ec22c65d95/SummarizedBenchmark/man/modifyMethod.Rd:14: file link 'quotation' in package 'rlang' does not exist and so has been treated as a topic
    modmethod                               html  
    performanceMetrics-setter               html  
    performanceMetrics                      html  
    plotMethodsOverlap                      html  
    plotROC                                 html  
    printMethod                             html  
    sb                                      html  
    tdat                                    html  
    tidyBDMethod                            html  
    tidyUpMetrics                           html  
    updateBench                             html  
*** copying figures
** building package indices
** installing vignettes
** testing if installed package can be loaded from temporary location
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path

install for x64

* installing *source* package 'SummarizedBenchmark' ...
** testing if installed package can be loaded
* MD5 sums
packaged installation of 'SummarizedBenchmark' as SummarizedBenchmark_2.6.0.zip
* DONE (SummarizedBenchmark)
* installing to library 'C:/Users/biocbuild/bbs-3.11-bioc/R/library'
package 'SummarizedBenchmark' successfully unpacked and MD5 sums checked