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INSTALL report for SSPA on tokay2

This page was generated on 2020-10-17 11:57:52 -0400 (Sat, 17 Oct 2020).

TO THE DEVELOPERS/MAINTAINERS OF THE SSPA PACKAGE: Please make sure to use the following settings in order to reproduce any error or warning you see on this page.
Package 1735/1905HostnameOS / ArchINSTALLBUILDCHECKBUILD BIN
SSPA 2.28.0
Maarten van Iterson
Snapshot Date: 2020-10-16 14:40:19 -0400 (Fri, 16 Oct 2020)
URL: https://git.bioconductor.org/packages/SSPA
Branch: RELEASE_3_11
Last Commit: 6a3aa3a
Last Changed Date: 2020-04-27 14:19:12 -0400 (Mon, 27 Apr 2020)
malbec2 Linux (Ubuntu 18.04.4 LTS) / x86_64  OK  OK  WARNINGS UNNEEDED, same version exists in internal repository
tokay2 Windows Server 2012 R2 Standard / x64 [ OK ] OK  WARNINGS  NA 
machv2 macOS 10.14.6 Mojave / x86_64  OK  OK  WARNINGS  OK UNNEEDED, same version exists in internal repository

Summary

Package: SSPA
Version: 2.28.0
Command: C:\cygwin\bin\curl.exe -O https://malbec2.bioconductor.org/BBS/3.11/bioc/src/contrib/SSPA_2.28.0.tar.gz && rm -rf SSPA.buildbin-libdir && mkdir SSPA.buildbin-libdir && C:\Users\biocbuild\bbs-3.11-bioc\R\bin\R.exe CMD INSTALL --merge-multiarch --build --library=SSPA.buildbin-libdir SSPA_2.28.0.tar.gz && C:\Users\biocbuild\bbs-3.11-bioc\R\bin\R.exe CMD INSTALL SSPA_2.28.0.zip && rm SSPA_2.28.0.tar.gz SSPA_2.28.0.zip
StartedAt: 2020-10-16 17:19:29 -0400 (Fri, 16 Oct 2020)
EndedAt: 2020-10-16 17:20:31 -0400 (Fri, 16 Oct 2020)
EllapsedTime: 62.2 seconds
RetCode: 0
Status:  OK  

Command output

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###
### Running command:
###
###   C:\cygwin\bin\curl.exe -O https://malbec2.bioconductor.org/BBS/3.11/bioc/src/contrib/SSPA_2.28.0.tar.gz && rm -rf SSPA.buildbin-libdir && mkdir SSPA.buildbin-libdir && C:\Users\biocbuild\bbs-3.11-bioc\R\bin\R.exe CMD INSTALL --merge-multiarch --build --library=SSPA.buildbin-libdir SSPA_2.28.0.tar.gz && C:\Users\biocbuild\bbs-3.11-bioc\R\bin\R.exe CMD INSTALL SSPA_2.28.0.zip && rm SSPA_2.28.0.tar.gz SSPA_2.28.0.zip
###
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100  390k  100  390k    0     0  6037k      0 --:--:-- --:--:-- --:--:-- 6734k

install for i386

* installing *source* package 'SSPA' ...
** using staged installation
** libs
"C:/rtools40/mingw32/bin/"gcc  -I"C:/Users/BIOCBU~1/BBS-3~1.11-/R/include" -DNDEBUG     -I"C:/extsoft/include"     -O2 -Wall  -std=gnu99 -mfpmath=sse -msse2 -mstackrealign -c SSPA_init.c -o SSPA_init.o
"C:/rtools40/mingw32/bin/"gcc  -I"C:/Users/BIOCBU~1/BBS-3~1.11-/R/include" -DNDEBUG     -I"C:/extsoft/include"     -O2 -Wall  -std=gnu99 -mfpmath=sse -msse2 -mstackrealign -c massdistc.c -o massdistc.o
"C:/rtools40/mingw32/bin/"gcc  -I"C:/Users/BIOCBU~1/BBS-3~1.11-/R/include" -DNDEBUG     -I"C:/extsoft/include"     -O2 -Wall  -std=gnu99 -mfpmath=sse -msse2 -mstackrealign -c nncgc.c -o nncgc.o
C:/rtools40/mingw32/bin/gcc -shared -s -static-libgcc -o SSPA.dll tmp.def SSPA_init.o massdistc.o nncgc.o -LC:/extsoft/lib/i386 -LC:/extsoft/lib -LC:/Users/BIOCBU~1/BBS-3~1.11-/R/bin/i386 -lR
installing to C:/Users/biocbuild/bbs-3.11-bioc/meat/SSPA.buildbin-libdir/00LOCK-SSPA/00new/SSPA/libs/i386
** R
** data
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
  converting help for package 'SSPA'
    finding HTML links ... done
    Nutrigenomics                           html  
    cornerLcurve                            html  
    cornerScurve                            html  
    dbitri                                  html  
    deconvolution                           html  
    deepSAGE                                html  
    defineEffectSizeRange                   html  
    findroot                                html  
    midpoint                                html  
    nncg                                    html  
    pbitri                                  html  
    picardplot                              html  
    pilotData                               html  
    predictpower                            html  
    qbitri                                  html  
    rbitri                                  html  
    regularization                          html  
    sampleSize                              html  
    show-methods                            html  
    simdat                                  html  
    simpson                                 html  
    standardform                            html  
    tikhonov                                html  
    trapezoidal                             html  
    trimbin                                 html  
** building package indices
** installing vignettes
** testing if installed package can be loaded from temporary location
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path

install for x64

* installing *source* package 'SSPA' ...
** libs
"C:/rtools40/mingw64/bin/"gcc  -I"C:/Users/BIOCBU~1/BBS-3~1.11-/R/include" -DNDEBUG     -I"C:/extsoft/include"     -O2 -Wall  -std=gnu99 -mfpmath=sse -msse2 -mstackrealign -c SSPA_init.c -o SSPA_init.o
"C:/rtools40/mingw64/bin/"gcc  -I"C:/Users/BIOCBU~1/BBS-3~1.11-/R/include" -DNDEBUG     -I"C:/extsoft/include"     -O2 -Wall  -std=gnu99 -mfpmath=sse -msse2 -mstackrealign -c massdistc.c -o massdistc.o
"C:/rtools40/mingw64/bin/"gcc  -I"C:/Users/BIOCBU~1/BBS-3~1.11-/R/include" -DNDEBUG     -I"C:/extsoft/include"     -O2 -Wall  -std=gnu99 -mfpmath=sse -msse2 -mstackrealign -c nncgc.c -o nncgc.o
C:/rtools40/mingw64/bin/gcc -shared -s -static-libgcc -o SSPA.dll tmp.def SSPA_init.o massdistc.o nncgc.o -LC:/extsoft/lib/x64 -LC:/extsoft/lib -LC:/Users/BIOCBU~1/BBS-3~1.11-/R/bin/x64 -lR
installing to C:/Users/biocbuild/bbs-3.11-bioc/meat/SSPA.buildbin-libdir/SSPA/libs/x64
** testing if installed package can be loaded
* MD5 sums
packaged installation of 'SSPA' as SSPA_2.28.0.zip
* DONE (SSPA)
* installing to library 'C:/Users/biocbuild/bbs-3.11-bioc/R/library'
package 'SSPA' successfully unpacked and MD5 sums checked