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INSTALL report for SRAdb on tokay2

This page was generated on 2020-10-17 11:57:51 -0400 (Sat, 17 Oct 2020).

TO THE DEVELOPERS/MAINTAINERS OF THE SRAdb PACKAGE: Please make sure to use the following settings in order to reproduce any error or warning you see on this page.
Package 1727/1905HostnameOS / ArchINSTALLBUILDCHECKBUILD BIN
SRAdb 1.50.0
Jack Zhu
Snapshot Date: 2020-10-16 14:40:19 -0400 (Fri, 16 Oct 2020)
URL: https://git.bioconductor.org/packages/SRAdb
Branch: RELEASE_3_11
Last Commit: fc16df9
Last Changed Date: 2020-04-27 14:21:57 -0400 (Mon, 27 Apr 2020)
malbec2 Linux (Ubuntu 18.04.4 LTS) / x86_64  OK  OK  OK UNNEEDED, same version exists in internal repository
tokay2 Windows Server 2012 R2 Standard / x64 [ OK ] OK  OK  NA 
machv2 macOS 10.14.6 Mojave / x86_64  OK  OK  OK  OK UNNEEDED, same version exists in internal repository

Summary

Package: SRAdb
Version: 1.50.0
Command: C:\cygwin\bin\curl.exe -O https://malbec2.bioconductor.org/BBS/3.11/bioc/src/contrib/SRAdb_1.50.0.tar.gz && rm -rf SRAdb.buildbin-libdir && mkdir SRAdb.buildbin-libdir && C:\Users\biocbuild\bbs-3.11-bioc\R\bin\R.exe CMD INSTALL --merge-multiarch --build --library=SRAdb.buildbin-libdir SRAdb_1.50.0.tar.gz && C:\Users\biocbuild\bbs-3.11-bioc\R\bin\R.exe CMD INSTALL SRAdb_1.50.0.zip && rm SRAdb_1.50.0.tar.gz SRAdb_1.50.0.zip
StartedAt: 2020-10-16 17:58:55 -0400 (Fri, 16 Oct 2020)
EndedAt: 2020-10-16 17:59:28 -0400 (Fri, 16 Oct 2020)
EllapsedTime: 33.9 seconds
RetCode: 0
Status:  OK  

Command output

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###
### Running command:
###
###   C:\cygwin\bin\curl.exe -O https://malbec2.bioconductor.org/BBS/3.11/bioc/src/contrib/SRAdb_1.50.0.tar.gz && rm -rf SRAdb.buildbin-libdir && mkdir SRAdb.buildbin-libdir && C:\Users\biocbuild\bbs-3.11-bioc\R\bin\R.exe CMD INSTALL --merge-multiarch --build --library=SRAdb.buildbin-libdir SRAdb_1.50.0.tar.gz && C:\Users\biocbuild\bbs-3.11-bioc\R\bin\R.exe CMD INSTALL SRAdb_1.50.0.zip && rm SRAdb_1.50.0.tar.gz SRAdb_1.50.0.zip
###
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100  552k  100  552k    0     0  5281k      0 --:--:-- --:--:-- --:--:-- 5637k

install for i386

* installing *source* package 'SRAdb' ...
** using staged installation
** R
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
  converting help for package 'SRAdb'
    finding HTML links ... done
    IGVclear                                html  
    IGVcollapse                             html  
    IGVgenome                               html  
    IGVgoto                                 html  
    IGVload                                 html  
    IGVsession                              html  
    IGVsnapshot                             html  
    IGVsocket                               html  
    IGVsort                                 html  
    SRAdb-package                           html  
    ascpR                                   html  
    ascpSRA                                 html  
    colDescriptions                         html  
    entityGraph                             html  
    getFASTQfile                            html  
    getFASTQinfo                            html  
    getSRA                                  html  
    getSRAdbFile                            html  
    getSRAfile                              html  
    getSRAinfo                              html  
    listSRAfile                             html  
    sraConvert                              html  
    sraGraph                                html  
    startIGV                                html  
** building package indices
** installing vignettes
** testing if installed package can be loaded from temporary location
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path

install for x64

* installing *source* package 'SRAdb' ...
** testing if installed package can be loaded
* MD5 sums
packaged installation of 'SRAdb' as SRAdb_1.50.0.zip
* DONE (SRAdb)
* installing to library 'C:/Users/biocbuild/bbs-3.11-bioc/R/library'
package 'SRAdb' successfully unpacked and MD5 sums checked