Back to Multiple platform build/check report for BioC 3.11
ABCDEFGHIJKLMNOPQ[R]STUVWXYZ

BUILD BIN report for RpsiXML on celaya2

This page was generated on 2020-01-16 13:31:29 -0500 (Thu, 16 Jan 2020).

Package 1469/1818HostnameOS / ArchINSTALLBUILDCHECKBUILD BIN
RpsiXML 2.29.0
Jitao David Zhang
Snapshot Date: 2020-01-15 16:46:30 -0500 (Wed, 15 Jan 2020)
URL: https://git.bioconductor.org/packages/RpsiXML
Branch: master
Last Commit: 7c6db46
Last Changed Date: 2019-10-29 13:34:51 -0500 (Tue, 29 Oct 2019)
malbec2 Linux (Ubuntu 18.04.3 LTS) / x86_64  OK  OK  OK UNNEEDED, same version exists in internal repository
tokay2 Windows Server 2012 R2 Standard / x64  OK  OK  OK  OK 
celaya2 OS X 10.11.6 El Capitan / x86_64  OK  OK  OK [ OK ]UNNEEDED, same version exists in internal repository

Summary

Package: RpsiXML
Version: 2.29.0
Command: rm -rf RpsiXML.buildbin-libdir && mkdir RpsiXML.buildbin-libdir && /Users/biocbuild/BBS/utils/build-universal.sh RpsiXML_2.29.0.tar.gz /Library/Frameworks/R.framework/Versions/Current/Resources/bin/R RpsiXML.buildbin-libdir
StartedAt: 2020-01-16 11:42:35 -0500 (Thu, 16 Jan 2020)
EndedAt: 2020-01-16 11:43:12 -0500 (Thu, 16 Jan 2020)
EllapsedTime: 36.4 seconds
RetCode: 0
Status:  OK 
PackageFile: RpsiXML_2.29.0.tgz
PackageFileSize: 2.959 MiB

Command output

##############################################################################
##############################################################################
###
### Running command:
###
###   rm -rf RpsiXML.buildbin-libdir && mkdir RpsiXML.buildbin-libdir && /Users/biocbuild/BBS/utils/build-universal.sh RpsiXML_2.29.0.tar.gz /Library/Frameworks/R.framework/Versions/Current/Resources/bin/R RpsiXML.buildbin-libdir
###
##############################################################################
##############################################################################


>>>>>>> 
>>>>>>> INSTALLATION WITH 'R CMD INSTALL --preclean --no-multiarch --library=RpsiXML.buildbin-libdir RpsiXML_2.29.0.tar.gz'
>>>>>>> 

* installing *source* package ‘RpsiXML’ ...
** using staged installation
** R
** inst
** byte-compile and prepare package for lazy loading
No methods found in package ‘Biobase’ for request: ‘listlen’ when loading ‘RpsiXML’
No methods found in package ‘annotate’ for requests: ‘pubmed’, ‘buildPubMedAbst’ when loading ‘RpsiXML’
Note: in method for ‘head’ with signature ‘x="ANY"’: expanding the
signature to include omitted arguments in definition: x = "missing"
Note: in method for ‘tail’ with signature ‘x="ANY"’: expanding the
signature to include omitted arguments in definition: x = "missing"
** help
*** installing help indices
** building package indices
** installing vignettes
** testing if installed package can be loaded from temporary location
No methods found in package ‘Biobase’ for request: ‘listlen’ when loading ‘RpsiXML’
No methods found in package ‘annotate’ for requests: ‘pubmed’, ‘buildPubMedAbst’ when loading ‘RpsiXML’
** testing if installed package can be loaded from final location
No methods found in package ‘Biobase’ for request: ‘listlen’ when loading ‘RpsiXML’
No methods found in package ‘annotate’ for requests: ‘pubmed’, ‘buildPubMedAbst’ when loading ‘RpsiXML’
** testing if installed package keeps a record of temporary installation path
* DONE (RpsiXML)