Multiple platform build/check report for BioC 3.11 - CHECK report for RedeR on celaya2

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### Running command:
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###   /Library/Frameworks/R.framework/Versions/Current/Resources/bin/R CMD check --install=check:RedeR.install-out.txt --library=/Library/Frameworks/R.framework/Versions/Current/Resources/library --no-vignettes --timings RedeR_1.35.0.tar.gz
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* using log directory ‘/Users/biocbuild/bbs-3.11-bioc/meat/RedeR.Rcheck’
* using R Under development (unstable) (2019-12-14 r77572)
* using platform: x86_64-apple-darwin15.6.0 (64-bit)
* using session charset: UTF-8
* using option ‘--no-vignettes’
* checking for file ‘RedeR/DESCRIPTION’ ... OK
* checking extension type ... Package
* this is package ‘RedeR’ version ‘1.35.0’
* checking package namespace information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking if there is a namespace ... OK
* checking for hidden files and directories ... OK
* checking for portable file names ... OK
* checking for sufficient/correct file permissions ... OK
* checking whether package ‘RedeR’ can be installed ... OK
* checking installed package size ... NOTE
  installed size is  8.1Mb
  sub-directories of 1Mb or more:
    data   3.3Mb
    java   4.3Mb
* checking package directory ... OK
* checking ‘build’ directory ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking for left-over files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking R files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* checking whether the package can be loaded ... OK
* checking whether the package can be loaded with stated dependencies ... OK
* checking whether the package can be unloaded cleanly ... OK
* checking whether the namespace can be loaded with stated dependencies ... OK
* checking whether the namespace can be unloaded cleanly ... OK
* checking dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... OK
* checking Rd files ... OK
* checking Rd metadata ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking contents of ‘data’ directory ... OK
* checking data for non-ASCII characters ... OK
* checking data for ASCII and uncompressed saves ... OK
* checking files in ‘vignettes’ ... OK
* checking examples ... OK
* checking for unstated dependencies in vignettes ... OK
* checking package vignettes in ‘inst/doc’ ... OK
* checking running R code from vignettes ... SKIPPED
* checking re-building of vignette outputs ... SKIPPED
* checking PDF version of manual ... OK
* DONE

Status: 1 NOTE
See
  ‘/Users/biocbuild/bbs-3.11-bioc/meat/RedeR.Rcheck/00check.log’
for details.

Installation output

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### Running command:
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###   /Library/Frameworks/R.framework/Versions/Current/Resources/bin/R CMD INSTALL RedeR
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* installing to library ‘/Library/Frameworks/R.framework/Versions/4.0/Resources/library’
* installing *source* package ‘RedeR’ ...
** using staged installation
** R
** data
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
** building package indices
** installing vignettes
** testing if installed package can be loaded from temporary location
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path
* DONE (RedeR)

Tests output

Example timings

name	user	system	elapsed
RedPort-class	0.005	0.001	0.007
RedPort	0.001	0.000	0.001
RedeR.data	0.519	0.053	0.572
addEdgeBetweenContainers	0.023	0.003	0.026
addEdges	0.018	0.002	0.019
addGraph	0.017	0.002	0.019
addLegend	0.015	0.003	0.018
addNodes	0.017	0.002	0.019
addSeries	0.015	0.001	0.016
addSubgraph	0.018	0.001	0.019
addSubgraph.list	0.016	0.001	0.017
att	0.042	0.003	0.046
calld	0.000	0.000	0.001
cea	0.018	0.003	0.022
deSelectEdges	0.019	0.002	0.020
deSelectGraph	0.024	0.003	0.027
deSelectNodes	0.012	0.002	0.014
deleteEdges	0.010	0.002	0.012
deleteNodes	0.017	0.002	0.020
deleteSelectedEdges	0.016	0.002	0.018
deleteSelectedNodes	0.017	0.002	0.020
duplicateGraph	0.015	0.002	0.016
exitd	0.001	0.000	0.001
getContainerComponets	0.018	0.001	0.019
getEdgeIDs	0.014	0.001	0.015
getEdges	0.014	0.001	0.015
getGraph	0.013	0.000	0.014
getNodeIDs	0.017	0.001	0.019
getNodes	0.016	0.001	0.017
getSourceEdgeIDs	0.014	0.001	0.016
getTargetEdgeIDs	0.017	0.002	0.019
gtoy.rm	0.001	0.000	0.000
isDynamicsActive	0.001	0.000	0.002
mergeNodes	0.023	0.002	0.025
mergeOutEdges	0.017	0.001	0.018
nestNodes	0.016	0.001	0.017
nesthc	1.957	0.183	2.141
ping	0.002	0.000	0.003
relax	0.022	0.003	0.025
resetd	0.002	0.001	0.001
selectAllEdges	0.022	0.003	0.024
selectAllNodes	0.018	0.003	0.022
selectEdges	0.017	0.003	0.019
selectGraph	0.019	0.002	0.021
selectNodes	0.020	0.003	0.023
setArrowDirection	0.022	0.003	0.025
subg	0.070	0.016	0.085
updateContainerSize	0.020	0.003	0.023
updateGraph	0.022	0.003	0.024
version	0.001	0.001	0.002

CHECK report for RedeR on celaya2

Summary

Command output

Installation output

Tests output

Example timings