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INSTALL report for RTopper on tokay2

This page was generated on 2020-10-17 11:57:43 -0400 (Sat, 17 Oct 2020).

TO THE DEVELOPERS/MAINTAINERS OF THE RTopper PACKAGE: Please make sure to use the following settings in order to reproduce any error or warning you see on this page.
Package 1553/1905HostnameOS / ArchINSTALLBUILDCHECKBUILD BIN
RTopper 1.34.0
Luigi Marchionni
Snapshot Date: 2020-10-16 14:40:19 -0400 (Fri, 16 Oct 2020)
URL: https://git.bioconductor.org/packages/RTopper
Branch: RELEASE_3_11
Last Commit: 3d6f4de
Last Changed Date: 2020-04-27 14:26:49 -0400 (Mon, 27 Apr 2020)
malbec2 Linux (Ubuntu 18.04.4 LTS) / x86_64  OK  OK  OK UNNEEDED, same version exists in internal repository
tokay2 Windows Server 2012 R2 Standard / x64 [ OK ] OK  WARNINGS  OK UNNEEDED, same version exists in internal repository
machv2 macOS 10.14.6 Mojave / x86_64  OK  OK  OK  OK UNNEEDED, same version exists in internal repository

Summary

Package: RTopper
Version: 1.34.0
Command: C:\cygwin\bin\curl.exe -O https://malbec2.bioconductor.org/BBS/3.11/bioc/src/contrib/RTopper_1.34.0.tar.gz && rm -rf RTopper.buildbin-libdir && mkdir RTopper.buildbin-libdir && C:\Users\biocbuild\bbs-3.11-bioc\R\bin\R.exe CMD INSTALL --merge-multiarch --build --library=RTopper.buildbin-libdir RTopper_1.34.0.tar.gz && C:\Users\biocbuild\bbs-3.11-bioc\R\bin\R.exe CMD INSTALL RTopper_1.34.0.zip && rm RTopper_1.34.0.tar.gz RTopper_1.34.0.zip
StartedAt: 2020-10-16 17:04:22 -0400 (Fri, 16 Oct 2020)
EndedAt: 2020-10-16 17:05:08 -0400 (Fri, 16 Oct 2020)
EllapsedTime: 46.3 seconds
RetCode: 0
Status:  OK  

Command output

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###
### Running command:
###
###   C:\cygwin\bin\curl.exe -O https://malbec2.bioconductor.org/BBS/3.11/bioc/src/contrib/RTopper_1.34.0.tar.gz && rm -rf RTopper.buildbin-libdir && mkdir RTopper.buildbin-libdir && C:\Users\biocbuild\bbs-3.11-bioc\R\bin\R.exe CMD INSTALL --merge-multiarch --build --library=RTopper.buildbin-libdir RTopper_1.34.0.tar.gz && C:\Users\biocbuild\bbs-3.11-bioc\R\bin\R.exe CMD INSTALL RTopper_1.34.0.zip && rm RTopper_1.34.0.tar.gz RTopper_1.34.0.zip
###
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  % Total    % Received % Xferd  Average Speed   Time    Time     Time  Current
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  0     0    0     0    0     0      0      0 --:--:-- --:--:-- --:--:--     0
100 1094k  100 1094k    0     0  6663k      0 --:--:-- --:--:-- --:--:-- 6969k

install for i386

* installing *source* package 'RTopper' ...
** using staged installation
** R
** data
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
  converting help for package 'RTopper'
    finding HTML links ... done
    RTopper-package                         html  
    adjustPvalGSE                           html  
    finding level-2 HTML links ... done

    combineGSE                              html  
    computeDrStat                           html  
    convertToDr                             html  
    dat                                     html  
    fgsList                                 html  
Rd warning: C:/Users/biocbuild/bbs-3.11-bioc/tmpdir/RtmpkZIIVO/R.INSTALLecc17cf67e1/RTopper/man/fgsList.Rd:37: file link 'org.Hs.eg' in package 'org.Hs.eg.db' does not exist and so has been treated as a topic
Rd warning: C:/Users/biocbuild/bbs-3.11-bioc/tmpdir/RtmpkZIIVO/R.INSTALLecc17cf67e1/RTopper/man/fgsList.Rd:41: file link 'GO' in package 'GO.db' does not exist and so has been treated as a topic
Rd warning: C:/Users/biocbuild/bbs-3.11-bioc/tmpdir/RtmpkZIIVO/R.INSTALLecc17cf67e1/RTopper/man/fgsList.Rd:42: file link 'KEGG' in package 'KEGG.db' does not exist and so has been treated as a topic
    gseResultsSep                           html  
    intScores                               html  
    pheno                                   html  
    runBatchGSE                             html  
    sepScores                               html  
** building package indices
** installing vignettes
** testing if installed package can be loaded from temporary location
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path

install for x64

* installing *source* package 'RTopper' ...
** testing if installed package can be loaded
* MD5 sums
packaged installation of 'RTopper' as RTopper_1.34.0.zip
* DONE (RTopper)
* installing to library 'C:/Users/biocbuild/bbs-3.11-bioc/R/library'
package 'RTopper' successfully unpacked and MD5 sums checked