Package: RSeqAn

Version: 1.7.0

Command: /Library/Frameworks/R.framework/Versions/Current/Resources/bin/R CMD build --keep-empty-dirs --no-resave-data RSeqAn

StartedAt: 2020-01-15 23:57:07 -0500 (Wed, 15 Jan 2020)

EndedAt: 2020-01-15 23:57:43 -0500 (Wed, 15 Jan 2020)

EllapsedTime: 36.3 seconds

RetCode: 1

Status:  ERROR

PackageFile: None

PackageFileSize: NA

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### Running command:
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###   /Library/Frameworks/R.framework/Versions/Current/Resources/bin/R CMD build --keep-empty-dirs --no-resave-data RSeqAn
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* checking for file ‘RSeqAn/DESCRIPTION’ ... OK
* preparing ‘RSeqAn’:
* checking DESCRIPTION meta-information ... OK
* cleaning src
* installing the package to build vignettes
* creating vignettes ... ERROR
--- re-building ‘first_example.Rmd’ using rmarkdown
Building shared library for Rcpp code chunk...
In file included from file14e28372dd88a.cpp:4:
In file included from /private/tmp/RtmpyqnhFF/Rinst14cb8294de81a/RSeqAn/include/seqan/file.h:68:
In file included from /private/tmp/RtmpyqnhFF/Rinst14cb8294de81a/RSeqAn/include/seqan/modifier.h:48:
In file included from /private/tmp/RtmpyqnhFF/Rinst14cb8294de81a/RSeqAn/include/seqan/parallel.h:94:
/private/tmp/RtmpyqnhFF/Rinst14cb8294de81a/RSeqAn/include/seqan/parallel/enumerable_thread_local.h:66:10: error: 'shared_timed_mutex' is unavailable: introduced in macOS 10.12
    std::shared_timed_mutex  _mutex{};        // TODO(rrahn): Replace by shared_mutex when c++17 is available.
         ^
/usr/local/clang8/bin/../include/c++/v1/shared_mutex:206:58: note: 'shared_timed_mutex' has been explicitly marked unavailable here
class _LIBCPP_TYPE_VIS _LIBCPP_AVAILABILITY_SHARED_MUTEX shared_timed_mutex
                                                         ^
In file included from file14e28372dd88a.cpp:4:
In file included from /private/tmp/RtmpyqnhFF/Rinst14cb8294de81a/RSeqAn/include/seqan/file.h:68:
In file included from /private/tmp/RtmpyqnhFF/Rinst14cb8294de81a/RSeqAn/include/seqan/modifier.h:48:
In file included from /private/tmp/RtmpyqnhFF/Rinst14cb8294de81a/RSeqAn/include/seqan/parallel.h:94:
/private/tmp/RtmpyqnhFF/Rinst14cb8294de81a/RSeqAn/include/seqan/parallel/enumerable_thread_local.h:127:10: error: 'shared_timed_mutex' is unavailable: introduced in macOS 10.12
    std::shared_timed_mutex  _mutex{};        // TODO(rrahn): Replace by shared_mutex when c++17 is available.
         ^
/usr/local/clang8/bin/../include/c++/v1/shared_mutex:206:58: note: 'shared_timed_mutex' has been explicitly marked unavailable here
class _LIBCPP_TYPE_VIS _LIBCPP_AVAILABILITY_SHARED_MUTEX shared_timed_mutex
                                                         ^
2 errors generated.
make: *** [file14e28372dd88a.o] Error 1
clang++ -std=gnu++11 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG   -I"/Library/Frameworks/R.framework/Versions/4.0/Resources/library/Rcpp/include" -I"/private/tmp/RtmpyqnhFF/Rinst14cb8294de81a/RSeqAn/include" -I"/private/tmp/RtmpR40epD/sourceCpp-x86_64-apple-darwin15.6.0-1.0.3" -isysroot /Library/Developer/CommandLineTools/SDKs/MacOSX.sdk -I/usr/local/include  -std=c++14 -fPIC  -Wall -g -O2  -c file14e28372dd88a.cpp -o file14e28372dd88a.o
Quitting from lines 53-93 (first_example.Rmd) 
Error: processing vignette 'first_example.Rmd' failed with diagnostics:
Error 1 occurred building shared library.
--- failed re-building ‘first_example.Rmd’

SUMMARY: processing the following file failed:
  ‘first_example.Rmd’

Error: Vignette re-building failed.
Execution halted