Nolwenn Le Meur
| Snapshot Date: 2020-10-16 14:40:19 -0400 (Fri, 16 Oct 2020) |
| URL: https://git.bioconductor.org/packages/PCpheno |
| Branch: RELEASE_3_11 |
| Last Commit: 9428ada |
| Last Changed Date: 2020-04-27 14:16:21 -0400 (Mon, 27 Apr 2020) |
| Back to Multiple platform build/check report for BioC 3.11 |
|
This page was generated on 2020-10-17 11:57:22 -0400 (Sat, 17 Oct 2020).
| TO THE DEVELOPERS/MAINTAINERS OF THE PCpheno PACKAGE: Please make sure to use the following settings in order to reproduce any error or warning you see on this page. |
| Package 1286/1905 | Hostname | OS / Arch | INSTALL | BUILD | CHECK | BUILD BIN | ||||||
| PCpheno 1.50.0 Nolwenn Le Meur
| malbec2 | Linux (Ubuntu 18.04.4 LTS) / x86_64 | OK | OK | OK | | ||||||
| tokay2 | Windows Server 2012 R2 Standard / x64 | [ OK ] | OK | OK | OK | | ||||||
| machv2 | macOS 10.14.6 Mojave / x86_64 | OK | OK | OK | OK | |
| Package: PCpheno |
| Version: 1.50.0 |
| Command: C:\cygwin\bin\curl.exe -O https://malbec2.bioconductor.org/BBS/3.11/bioc/src/contrib/PCpheno_1.50.0.tar.gz && rm -rf PCpheno.buildbin-libdir && mkdir PCpheno.buildbin-libdir && C:\Users\biocbuild\bbs-3.11-bioc\R\bin\R.exe CMD INSTALL --merge-multiarch --build --library=PCpheno.buildbin-libdir PCpheno_1.50.0.tar.gz && C:\Users\biocbuild\bbs-3.11-bioc\R\bin\R.exe CMD INSTALL PCpheno_1.50.0.zip && rm PCpheno_1.50.0.tar.gz PCpheno_1.50.0.zip |
| StartedAt: 2020-10-16 18:44:11 -0400 (Fri, 16 Oct 2020) |
| EndedAt: 2020-10-16 18:44:59 -0400 (Fri, 16 Oct 2020) |
| EllapsedTime: 48.1 seconds |
| RetCode: 0 |
| Status: OK |
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### Running command:
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### C:\cygwin\bin\curl.exe -O https://malbec2.bioconductor.org/BBS/3.11/bioc/src/contrib/PCpheno_1.50.0.tar.gz && rm -rf PCpheno.buildbin-libdir && mkdir PCpheno.buildbin-libdir && C:\Users\biocbuild\bbs-3.11-bioc\R\bin\R.exe CMD INSTALL --merge-multiarch --build --library=PCpheno.buildbin-libdir PCpheno_1.50.0.tar.gz && C:\Users\biocbuild\bbs-3.11-bioc\R\bin\R.exe CMD INSTALL PCpheno_1.50.0.zip && rm PCpheno_1.50.0.tar.gz PCpheno_1.50.0.zip
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install for i386
* installing *source* package 'PCpheno' ...
** using staged installation
** R
** data
** byte-compile and prepare package for lazy loading
No methods found in package 'Biobase' for request: 'listlen' when loading 'RpsiXML'
No methods found in package 'annotate' for requests: 'pubmed', 'buildPubMedAbst' when loading 'RpsiXML'
No methods found in package 'BiocGenerics' for request: 'plot' when loading 'SLGI'
** help
*** installing help indices
converting help for package 'PCpheno'
finding HTML links ... done
CoHyperGParams-class html
CoHyperGResult-class html
Dudley html
Giaever html
HI html
KEGG2SCISI html
Kastenmayer html
Lesage html
Osterberg html
PCpheno.package html
SGDphenoL html
YEASTOHNOLOG html
buildFDMat html
categoryToEntrezBuilder html
complexStatus html
deResult-class html
densityEstimate html
getDescr html
getFDgene html
graphTheory html
gtResult-class html
overlap html
plot html
ppiInteraction html
reduceM html
testResult-class html
truncName html
** building package indices
** installing vignettes
** testing if installed package can be loaded from temporary location
No methods found in package 'Biobase' for request: 'listlen' when loading 'RpsiXML'
No methods found in package 'annotate' for requests: 'pubmed', 'buildPubMedAbst' when loading 'RpsiXML'
No methods found in package 'BiocGenerics' for request: 'plot' when loading 'SLGI'
** testing if installed package can be loaded from final location
No methods found in package 'Biobase' for request: 'listlen' when loading 'RpsiXML'
No methods found in package 'annotate' for requests: 'pubmed', 'buildPubMedAbst' when loading 'RpsiXML'
No methods found in package 'BiocGenerics' for request: 'plot' when loading 'SLGI'
** testing if installed package keeps a record of temporary installation path
install for x64
* installing *source* package 'PCpheno' ...
** testing if installed package can be loaded
No methods found in package 'Biobase' for request: 'listlen' when loading 'RpsiXML'
No methods found in package 'annotate' for requests: 'pubmed', 'buildPubMedAbst' when loading 'RpsiXML'
No methods found in package 'BiocGenerics' for request: 'plot' when loading 'SLGI'
* MD5 sums
packaged installation of 'PCpheno' as PCpheno_1.50.0.zip
* DONE (PCpheno)
* installing to library 'C:/Users/biocbuild/bbs-3.11-bioc/R/library'
package 'PCpheno' successfully unpacked and MD5 sums checked