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BUILD BIN report for PAA on celaya2

This page was generated on 2020-01-16 13:40:18 -0500 (Thu, 16 Jan 2020).

Package 1208/1818HostnameOS / ArchINSTALLBUILDCHECKBUILD BIN
PAA 1.21.0
Michael Turewicz , Martin Eisenacher
Snapshot Date: 2020-01-15 16:46:30 -0500 (Wed, 15 Jan 2020)
URL: https://git.bioconductor.org/packages/PAA
Branch: master
Last Commit: 30aa705
Last Changed Date: 2019-10-29 13:38:19 -0500 (Tue, 29 Oct 2019)
malbec2 Linux (Ubuntu 18.04.3 LTS) / x86_64  OK  OK  OK UNNEEDED, same version exists in internal repository
tokay2 Windows Server 2012 R2 Standard / x64  OK  OK  OK  OK UNNEEDED, same version exists in internal repository
celaya2 OS X 10.11.6 El Capitan / x86_64  OK  OK  OK [ OK ]UNNEEDED, same version exists in internal repository

Summary

Package: PAA
Version: 1.21.0
Command: rm -rf PAA.buildbin-libdir && mkdir PAA.buildbin-libdir && /Users/biocbuild/BBS/utils/build-universal.sh PAA_1.21.0.tar.gz /Library/Frameworks/R.framework/Versions/Current/Resources/bin/R PAA.buildbin-libdir
StartedAt: 2020-01-16 11:27:36 -0500 (Thu, 16 Jan 2020)
EndedAt: 2020-01-16 11:28:53 -0500 (Thu, 16 Jan 2020)
EllapsedTime: 77.1 seconds
RetCode: 0
Status:  OK 
PackageFile: PAA_1.21.0.tgz
PackageFileSize: 3.968 MiB

Command output

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### Running command:
###
###   rm -rf PAA.buildbin-libdir && mkdir PAA.buildbin-libdir && /Users/biocbuild/BBS/utils/build-universal.sh PAA_1.21.0.tar.gz /Library/Frameworks/R.framework/Versions/Current/Resources/bin/R PAA.buildbin-libdir
###
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>>>>>>> 
>>>>>>> INSTALLATION WITH 'R CMD INSTALL --preclean --no-multiarch --library=PAA.buildbin-libdir PAA_1.21.0.tar.gz'
>>>>>>> 

* installing *source* package ‘PAA’ ...
** using staged installation
** libs
clang -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG  -I'/Library/Frameworks/R.framework/Versions/4.0/Resources/library/Rcpp/include' -isysroot /Library/Developer/CommandLineTools/SDKs/MacOSX.sdk -I/usr/local/include   -fPIC  -Wall -g -O2  -c PAA_init.c -o PAA_init.o
clang++ -std=gnu++11 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG  -I'/Library/Frameworks/R.framework/Versions/4.0/Resources/library/Rcpp/include' -isysroot /Library/Developer/CommandLineTools/SDKs/MacOSX.sdk -I/usr/local/include   -fPIC  -Wall -g -O2  -c RcppExports.cpp -o RcppExports.o
clang++ -std=gnu++11 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG  -I'/Library/Frameworks/R.framework/Versions/4.0/Resources/library/Rcpp/include' -isysroot /Library/Developer/CommandLineTools/SDKs/MacOSX.sdk -I/usr/local/include   -fPIC  -Wall -g -O2  -c joinMCountResults.cpp -o joinMCountResults.o
clang++ -std=gnu++11 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG  -I'/Library/Frameworks/R.framework/Versions/4.0/Resources/library/Rcpp/include' -isysroot /Library/Developer/CommandLineTools/SDKs/MacOSX.sdk -I/usr/local/include   -fPIC  -Wall -g -O2  -c mCount.cpp -o mCount.o
clang++ -std=gnu++11 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG  -I'/Library/Frameworks/R.framework/Versions/4.0/Resources/library/Rcpp/include' -isysroot /Library/Developer/CommandLineTools/SDKs/MacOSX.sdk -I/usr/local/include   -fPIC  -Wall -g -O2  -c mMsMatrix.cpp -o mMsMatrix.o
clang++ -std=gnu++11 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG  -I'/Library/Frameworks/R.framework/Versions/4.0/Resources/library/Rcpp/include' -isysroot /Library/Developer/CommandLineTools/SDKs/MacOSX.sdk -I/usr/local/include   -fPIC  -Wall -g -O2  -c sampling.cpp -o sampling.o
clang++ -std=gnu++11 -dynamiclib -Wl,-headerpad_max_install_names -undefined dynamic_lookup -single_module -multiply_defined suppress -L/Library/Frameworks/R.framework/Resources/lib -L/usr/local/lib -o PAA.so PAA_init.o RcppExports.o joinMCountResults.o mCount.o mMsMatrix.o sampling.o -F/Library/Frameworks/R.framework/.. -framework R -Wl,-framework -Wl,CoreFoundation
installing to /Users/biocbuild/bbs-3.11-bioc/meat/PAA.buildbin-libdir/00LOCK-PAA/00new/PAA/libs
** R
** demo
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
** building package indices
** installing vignettes
** testing if installed package can be loaded from temporary location
** checking absolute paths in shared objects and dynamic libraries
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path
* DONE (PAA)


>>>>>>> 
>>>>>>> FIXING LINKS FOR PAA.buildbin-libdir/PAA/libs//PAA.so
>>>>>>> 

install_name_tool -change "/usr/local/lib/libgcc_s.1.dylib" "/Library/Frameworks/R.framework/Versions/4.0/Resources/lib/libgcc_s.1.dylib" "PAA.buildbin-libdir/PAA/libs//PAA.so"
install_name_tool -change "/usr/local/lib/libgfortran.3.dylib" "/Library/Frameworks/R.framework/Versions/4.0/Resources/lib/libgfortran.3.dylib" "PAA.buildbin-libdir/PAA/libs//PAA.so"
install_name_tool -change "/usr/local/lib/libreadline.5.2.dylib" "/Library/Frameworks/R.framework/Versions/4.0/Resources/lib/libreadline.5.2.dylib" "PAA.buildbin-libdir/PAA/libs//PAA.so"
install_name_tool -change "/usr/local/lib/libreadline.dylib" "/Library/Frameworks/R.framework/Versions/4.0/Resources/lib/libreadline.dylib" "PAA.buildbin-libdir/PAA/libs//PAA.so"
install_name_tool -change "/usr/local/lib/libquadmath.0.dylib" "/Library/Frameworks/R.framework/Versions/4.0/Resources/lib/libquadmath.0.dylib" "PAA.buildbin-libdir/PAA/libs//PAA.so"