Package: LinkHD

Version: 1.1.0

Command: /Library/Frameworks/R.framework/Versions/Current/Resources/bin/R CMD check --install=check:LinkHD.install-out.txt --library=/Library/Frameworks/R.framework/Versions/Current/Resources/library --no-vignettes --timings LinkHD_1.1.0.tar.gz

StartedAt: 2020-01-16 05:53:38 -0500 (Thu, 16 Jan 2020)

EndedAt: 2020-01-16 05:59:00 -0500 (Thu, 16 Jan 2020)

EllapsedTime: 321.9 seconds

RetCode: 0

Status:  OK

CheckDir: LinkHD.Rcheck

Warnings: 0

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### Running command:
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###   /Library/Frameworks/R.framework/Versions/Current/Resources/bin/R CMD check --install=check:LinkHD.install-out.txt --library=/Library/Frameworks/R.framework/Versions/Current/Resources/library --no-vignettes --timings LinkHD_1.1.0.tar.gz
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* using log directory ‘/Users/biocbuild/bbs-3.11-bioc/meat/LinkHD.Rcheck’
* using R Under development (unstable) (2019-12-14 r77572)
* using platform: x86_64-apple-darwin15.6.0 (64-bit)
* using session charset: UTF-8
* using option ‘--no-vignettes’
* checking for file ‘LinkHD/DESCRIPTION’ ... OK
* checking extension type ... Package
* this is package ‘LinkHD’ version ‘1.1.0’
* package encoding: UTF-8
* checking package namespace information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking if there is a namespace ... OK
* checking for hidden files and directories ... OK
* checking for portable file names ... OK
* checking for sufficient/correct file permissions ... OK
* checking whether package ‘LinkHD’ can be installed ... OK
* checking installed package size ... OK
* checking package directory ... OK
* checking ‘build’ directory ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking for left-over files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking R files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* checking whether the package can be loaded ... OK
* checking whether the package can be loaded with stated dependencies ... OK
* checking whether the package can be unloaded cleanly ... OK
* checking whether the namespace can be loaded with stated dependencies ... OK
* checking whether the namespace can be unloaded cleanly ... OK
* checking dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... OK
* checking Rd files ... OK
* checking Rd metadata ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking contents of ‘data’ directory ... OK
* checking data for non-ASCII characters ... OK
* checking data for ASCII and uncompressed saves ... OK
* checking files in ‘vignettes’ ... OK
* checking examples ... OK
Examples with CPU (user + system) or elapsed time > 5s
                   user system elapsed
OTU2Taxa-OTU2Taxa 6.203  0.229   6.436
* checking for unstated dependencies in vignettes ... OK
* checking package vignettes in ‘inst/doc’ ... OK
* checking running R code from vignettes ... SKIPPED
* checking re-building of vignette outputs ... SKIPPED
* checking PDF version of manual ... OK
* DONE

Status: OK

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### Running command:
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###   /Library/Frameworks/R.framework/Versions/Current/Resources/bin/R CMD INSTALL LinkHD
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* installing to library ‘/Library/Frameworks/R.framework/Versions/4.0/Resources/library’
* installing *source* package ‘LinkHD’ ...
** using staged installation
** R
** data
*** moving datasets to lazyload DB
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
** building package indices
** installing vignettes
** testing if installed package can be loaded from temporary location
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path
* DONE (LinkHD)

name	user	system	elapsed
Compromise_matrix-methods	1.790	0.234	2.024
DataProcessing	0.015	0.006	0.021
DistStatis-Class	0.002	0.001	0.002
DistStatis-CompromisePlot	1.169	0.090	1.259
DistStatis-CorrelationPlot	1.850	0.109	1.960
DistStatis-GlobalPlot	1.455	0.100	1.556
Euclid_Im-methods	0.690	0.095	0.785
Inertia_RV-methods	0.674	0.059	0.732
Inertia_comp-methods	0.615	0.070	0.686
LinkData-LinkData	0.693	0.059	0.751
OTU2Taxa-OTU2Taxa	6.203	0.229	6.436
RQO-methods	0.795	0.051	0.845
Read_Data	0.000	0.001	0.001
Ruminotypes	0.001	0.001	0.002
Taraoceans	0.002	0.002	0.006
Trajectories-methods	2.126	0.623	2.749
VarSelection-Class	0.001	0.001	0.001
VarSelection	4.118	0.110	4.228
VarTable-methods	3.908	0.100	4.008
Var_coordinates-methods	4.732	0.166	4.992
Variables-methods	3.809	0.151	3.969
compromise_coords-methods	0.817	0.062	0.946
correl-methods	0.765	0.067	0.834
dAB-dAB	1.498	0.057	1.557
sign_values-methods	4.256	0.129	4.479