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BUILD report for LVSmiRNA on celaya2

This page was generated on 2020-01-16 13:32:54 -0500 (Thu, 16 Jan 2020).

Package 926/1818HostnameOS / ArchINSTALLBUILDCHECKBUILD BIN
LVSmiRNA 1.37.1
Stefano Calza
Snapshot Date: 2020-01-15 16:46:30 -0500 (Wed, 15 Jan 2020)
URL: https://git.bioconductor.org/packages/LVSmiRNA
Branch: master
Last Commit: 419c9cb
Last Changed Date: 2020-01-06 11:18:42 -0500 (Mon, 06 Jan 2020)
malbec2 Linux (Ubuntu 18.04.3 LTS) / x86_64  OK  ERROR  skipped 
tokay2 Windows Server 2012 R2 Standard / x64  OK  ERROR  skipped  skipped 
celaya2 OS X 10.11.6 El Capitan / x86_64  OK [ ERROR ] skipped  skipped 

Summary

Package: LVSmiRNA
Version: 1.37.1
Command: /Library/Frameworks/R.framework/Versions/Current/Resources/bin/R CMD build --keep-empty-dirs --no-resave-data LVSmiRNA
StartedAt: 2020-01-15 20:26:00 -0500 (Wed, 15 Jan 2020)
EndedAt: 2020-01-15 20:26:33 -0500 (Wed, 15 Jan 2020)
EllapsedTime: 32.9 seconds
RetCode: 1
Status:  ERROR 
PackageFile: None
PackageFileSize: NA

Command output

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### Running command:
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###   /Library/Frameworks/R.framework/Versions/Current/Resources/bin/R CMD build --keep-empty-dirs --no-resave-data LVSmiRNA
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* checking for file ‘LVSmiRNA/DESCRIPTION’ ... OK
* preparing ‘LVSmiRNA’:
* checking DESCRIPTION meta-information ... OK
* cleaning src
* installing the package to build vignettes
* creating vignettes ... ERROR
--- re-building ‘LVSmiRNA.Rnw’ using Sweave
Loading required package: splines
No methods found in package ‘BiocGenerics’ for requests: ‘as.vector’, ‘unlist’ when loading ‘LVSmiRNA’
Warning: Package 'LVSmiRNA' is deprecated and will be removed from Bioconductor
  version 3.12

Error: processing vignette 'LVSmiRNA.Rnw' failed with diagnostics:
 chunk 5 (label = estVC) 
Error in UseMethod("estVC") : 
  no applicable method for 'estVC' applied to an object of class "c('RGList', 'list', 'LargeDataObject', 'vector')"

--- failed re-building ‘LVSmiRNA.Rnw’

SUMMARY: processing the following file failed:
  ‘LVSmiRNA.Rnw’

Error: Vignette re-building failed.
Execution halted