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INSTALL report for LOLA on tokay2

This page was generated on 2020-10-17 11:56:58 -0400 (Sat, 17 Oct 2020).

TO THE DEVELOPERS/MAINTAINERS OF THE LOLA PACKAGE: Please make sure to use the following settings in order to reproduce any error or warning you see on this page.
Package 953/1905HostnameOS / ArchINSTALLBUILDCHECKBUILD BIN
LOLA 1.18.1
Nathan Sheffield
Snapshot Date: 2020-10-16 14:40:19 -0400 (Fri, 16 Oct 2020)
URL: https://git.bioconductor.org/packages/LOLA
Branch: RELEASE_3_11
Last Commit: 2864be5
Last Changed Date: 2020-09-01 13:47:48 -0400 (Tue, 01 Sep 2020)
malbec2 Linux (Ubuntu 18.04.4 LTS) / x86_64  OK  OK  OK UNNEEDED, same version exists in internal repository
tokay2 Windows Server 2012 R2 Standard / x64 [ OK ] OK  OK  OK UNNEEDED, same version exists in internal repository
machv2 macOS 10.14.6 Mojave / x86_64  OK  OK  OK  OK UNNEEDED, same version exists in internal repository

Summary

Package: LOLA
Version: 1.18.1
Command: C:\cygwin\bin\curl.exe -O https://malbec2.bioconductor.org/BBS/3.11/bioc/src/contrib/LOLA_1.18.1.tar.gz && rm -rf LOLA.buildbin-libdir && mkdir LOLA.buildbin-libdir && C:\Users\biocbuild\bbs-3.11-bioc\R\bin\R.exe CMD INSTALL --merge-multiarch --build --library=LOLA.buildbin-libdir LOLA_1.18.1.tar.gz && C:\Users\biocbuild\bbs-3.11-bioc\R\bin\R.exe CMD INSTALL LOLA_1.18.1.zip && rm LOLA_1.18.1.tar.gz LOLA_1.18.1.zip
StartedAt: 2020-10-16 18:06:39 -0400 (Fri, 16 Oct 2020)
EndedAt: 2020-10-16 18:07:44 -0400 (Fri, 16 Oct 2020)
EllapsedTime: 64.6 seconds
RetCode: 0
Status:  OK  

Command output

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###
### Running command:
###
###   C:\cygwin\bin\curl.exe -O https://malbec2.bioconductor.org/BBS/3.11/bioc/src/contrib/LOLA_1.18.1.tar.gz && rm -rf LOLA.buildbin-libdir && mkdir LOLA.buildbin-libdir && C:\Users\biocbuild\bbs-3.11-bioc\R\bin\R.exe CMD INSTALL --merge-multiarch --build --library=LOLA.buildbin-libdir LOLA_1.18.1.tar.gz && C:\Users\biocbuild\bbs-3.11-bioc\R\bin\R.exe CMD INSTALL LOLA_1.18.1.zip && rm LOLA_1.18.1.tar.gz LOLA_1.18.1.zip
###
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  % Total    % Received % Xferd  Average Speed   Time    Time     Time  Current
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  0     0    0     0    0     0      0      0 --:--:-- --:--:-- --:--:--     0
100  533k  100  533k    0     0  5393k      0 --:--:-- --:--:-- --:--:-- 5797k

install for i386

* installing *source* package 'LOLA' ...
** using staged installation
** R
** data
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
  converting help for package 'LOLA'
    finding HTML links ... done
    LOLA                                    html  
    buildRestrictedUniverse                 html  
    checkUniverseAppropriateness            html  
    cleanws                                 html  
    countOverlapsAnyRev                     html  
    extractEnrichmentOverlaps               html  
    getRegionFile                           html  
    getRegionSet                            html  
    lapplyAlias                             html  
    listRegionSets                          html  
    listToGRangesList                       html  
    loadRegionDB                            html  
    mergeRegionDBs                          html  
    nlist                                   html  
    plotTopLOLAEnrichments                  html  
    readBed                                 html  
    readCollection                          html  
    readCollectionAnnotation                html  
    readCollectionFiles                     html  
    readRegionGRL                           html  
    readRegionSetAnnotation                 html  
    redefineUserSets                        html  
    replaceFileExtension                    html  
    runLOLA                                 html  
    sampleGRL                               html  
    setLapplyAlias                          html  
    setSharedDataDir                        html  
    splitDataTable                          html  
    splitFileIntoCollection                 html  
    userSets                                html  
    userUniverse                            html  
    write.tsv                               html  
    writeCombinedEnrichment                 html  
    writeDataTableSplitByColumn             html  
*** copying figures
** building package indices
** installing vignettes
** testing if installed package can be loaded from temporary location
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path

install for x64

* installing *source* package 'LOLA' ...
** testing if installed package can be loaded
* MD5 sums
packaged installation of 'LOLA' as LOLA_1.18.1.zip
* DONE (LOLA)
* installing to library 'C:/Users/biocbuild/bbs-3.11-bioc/R/library'
package 'LOLA' successfully unpacked and MD5 sums checked