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INSTALL report for ITALICS on tokay2

This page was generated on 2020-10-17 11:56:55 -0400 (Sat, 17 Oct 2020).

TO THE DEVELOPERS/MAINTAINERS OF THE ITALICS PACKAGE: Please make sure to use the following settings in order to reproduce any error or warning you see on this page.
Package 905/1905HostnameOS / ArchINSTALLBUILDCHECKBUILD BIN
ITALICS 2.48.0
Guillem Rigaill
Snapshot Date: 2020-10-16 14:40:19 -0400 (Fri, 16 Oct 2020)
URL: https://git.bioconductor.org/packages/ITALICS
Branch: RELEASE_3_11
Last Commit: 7bf7334
Last Changed Date: 2020-04-27 14:17:41 -0400 (Mon, 27 Apr 2020)
malbec2 Linux (Ubuntu 18.04.4 LTS) / x86_64  OK  OK  OK UNNEEDED, same version exists in internal repository
tokay2 Windows Server 2012 R2 Standard / x64 [ OK ] OK  OK  OK UNNEEDED, same version exists in internal repository
machv2 macOS 10.14.6 Mojave / x86_64  OK  OK  OK  OK UNNEEDED, same version exists in internal repository

Summary

Package: ITALICS
Version: 2.48.0
Command: C:\cygwin\bin\curl.exe -O https://malbec2.bioconductor.org/BBS/3.11/bioc/src/contrib/ITALICS_2.48.0.tar.gz && rm -rf ITALICS.buildbin-libdir && mkdir ITALICS.buildbin-libdir && C:\Users\biocbuild\bbs-3.11-bioc\R\bin\R.exe CMD INSTALL --merge-multiarch --build --library=ITALICS.buildbin-libdir ITALICS_2.48.0.tar.gz && C:\Users\biocbuild\bbs-3.11-bioc\R\bin\R.exe CMD INSTALL ITALICS_2.48.0.zip && rm ITALICS_2.48.0.tar.gz ITALICS_2.48.0.zip
StartedAt: 2020-10-16 18:00:19 -0400 (Fri, 16 Oct 2020)
EndedAt: 2020-10-16 18:01:21 -0400 (Fri, 16 Oct 2020)
EllapsedTime: 62.1 seconds
RetCode: 0
Status:  OK  

Command output

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###
### Running command:
###
###   C:\cygwin\bin\curl.exe -O https://malbec2.bioconductor.org/BBS/3.11/bioc/src/contrib/ITALICS_2.48.0.tar.gz && rm -rf ITALICS.buildbin-libdir && mkdir ITALICS.buildbin-libdir && C:\Users\biocbuild\bbs-3.11-bioc\R\bin\R.exe CMD INSTALL --merge-multiarch --build --library=ITALICS.buildbin-libdir ITALICS_2.48.0.tar.gz && C:\Users\biocbuild\bbs-3.11-bioc\R\bin\R.exe CMD INSTALL ITALICS_2.48.0.zip && rm ITALICS_2.48.0.tar.gz ITALICS_2.48.0.zip
###
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100  121k  100  121k    0     0  1799k      0 --:--:-- --:--:-- --:--:-- 1993k

install for i386

* installing *source* package 'ITALICS' ...
** using staged installation
** R
** inst
** byte-compile and prepare package for lazy loading
No methods found in package 'RSQLite' for request: 'dbListFields' when loading 'oligo'
** help
*** installing help indices
  converting help for package 'ITALICS'
    finding HTML links ... done
    GLAD.GLAD                               html  
    ITALICSNew                              html  
    ITALICSTrain                            html  
    Model.GetConfDat                        html  
    Model.GetCorrection                     html  
    Model.GetEffet                          html  
    Model.GetModel                          html  
    Model.GetResidu                         html  
    New.AddInfo                             html  
    New.fromQuartetToSnp                    html  
    New.fromSnpToQuartet                    html  
    New.getQuartet                          html  
    New.getSnpInfo                          html  
    New.readQuartetCopyNb                   html  
** building package indices
** installing vignettes
** testing if installed package can be loaded from temporary location
No methods found in package 'RSQLite' for request: 'dbListFields' when loading 'oligo'
** testing if installed package can be loaded from final location
No methods found in package 'RSQLite' for request: 'dbListFields' when loading 'oligo'
** testing if installed package keeps a record of temporary installation path

install for x64

* installing *source* package 'ITALICS' ...
** testing if installed package can be loaded
No methods found in package 'RSQLite' for request: 'dbListFields' when loading 'oligo'
* MD5 sums
packaged installation of 'ITALICS' as ITALICS_2.48.0.zip
* DONE (ITALICS)
* installing to library 'C:/Users/biocbuild/bbs-3.11-bioc/R/library'
package 'ITALICS' successfully unpacked and MD5 sums checked