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INSTALL report for IPO on tokay2

This page was generated on 2020-10-17 11:56:54 -0400 (Sat, 17 Oct 2020).

TO THE DEVELOPERS/MAINTAINERS OF THE IPO PACKAGE: Please make sure to use the following settings in order to reproduce any error or warning you see on this page.
Package 892/1905HostnameOS / ArchINSTALLBUILDCHECKBUILD BIN
IPO 1.14.0
Thomas Riebenbauer
Snapshot Date: 2020-10-16 14:40:19 -0400 (Fri, 16 Oct 2020)
URL: https://git.bioconductor.org/packages/IPO
Branch: RELEASE_3_11
Last Commit: 69a8067
Last Changed Date: 2020-04-27 15:00:22 -0400 (Mon, 27 Apr 2020)
malbec2 Linux (Ubuntu 18.04.4 LTS) / x86_64  OK  OK  OK UNNEEDED, same version exists in internal repository
tokay2 Windows Server 2012 R2 Standard / x64 [ OK ] OK  WARNINGS  OK UNNEEDED, same version exists in internal repository
machv2 macOS 10.14.6 Mojave / x86_64  OK  OK  OK  OK UNNEEDED, same version exists in internal repository

Summary

Package: IPO
Version: 1.14.0
Command: C:\cygwin\bin\curl.exe -O https://malbec2.bioconductor.org/BBS/3.11/bioc/src/contrib/IPO_1.14.0.tar.gz && rm -rf IPO.buildbin-libdir && mkdir IPO.buildbin-libdir && C:\Users\biocbuild\bbs-3.11-bioc\R\bin\R.exe CMD INSTALL --merge-multiarch --build --library=IPO.buildbin-libdir IPO_1.14.0.tar.gz && C:\Users\biocbuild\bbs-3.11-bioc\R\bin\R.exe CMD INSTALL IPO_1.14.0.zip && rm IPO_1.14.0.tar.gz IPO_1.14.0.zip
StartedAt: 2020-10-16 19:02:00 -0400 (Fri, 16 Oct 2020)
EndedAt: 2020-10-16 19:03:11 -0400 (Fri, 16 Oct 2020)
EllapsedTime: 71.0 seconds
RetCode: 0
Status:  OK  

Command output

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###
### Running command:
###
###   C:\cygwin\bin\curl.exe -O https://malbec2.bioconductor.org/BBS/3.11/bioc/src/contrib/IPO_1.14.0.tar.gz && rm -rf IPO.buildbin-libdir && mkdir IPO.buildbin-libdir && C:\Users\biocbuild\bbs-3.11-bioc\R\bin\R.exe CMD INSTALL --merge-multiarch --build --library=IPO.buildbin-libdir IPO_1.14.0.tar.gz && C:\Users\biocbuild\bbs-3.11-bioc\R\bin\R.exe CMD INSTALL IPO_1.14.0.zip && rm IPO_1.14.0.tar.gz IPO_1.14.0.zip
###
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  7  211k    7 16384    0     0   255k      0 --:--:-- --:--:-- --:--:--  280k
100  211k  100  211k    0     0  3263k      0 --:--:-- --:--:-- --:--:-- 3582k

install for i386

* installing *source* package 'IPO' ...
** using staged installation
** R
** inst
** byte-compile and prepare package for lazy loading
Warning message:
replacing previous import 'xcms::plot' by 'graphics::plot' when loading 'CAMERA' 
** help
*** installing help indices
  converting help for package 'IPO'
    finding HTML links ... done
    IPO-package                             html  
    attachList                              html  
    calcPPS                                 html  
    calculateXcmsSet                        html  
Rd warning: C:/Users/biocbuild/bbs-3.11-bioc/tmpdir/RtmpIDSQBv/R.INSTALL2118717865cf/IPO/man/calculateXcmsSet.Rd:19: file link 'findPeaks.centWave' in package 'xcms' does not exist and so has been treated as a topic
Rd warning: C:/Users/biocbuild/bbs-3.11-bioc/tmpdir/RtmpIDSQBv/R.INSTALL2118717865cf/IPO/man/calculateXcmsSet.Rd:24: file link 'SerialParam' in package 'BiocParallel' does not exist and so has been treated as a topic
Rd warning: C:/Users/biocbuild/bbs-3.11-bioc/tmpdir/RtmpIDSQBv/R.INSTALL2118717865cf/IPO/man/calculateXcmsSet.Rd:25: file link 'MulticoreParam' in package 'BiocParallel' does not exist and so has been treated as a topic
Rd warning: C:/Users/biocbuild/bbs-3.11-bioc/tmpdir/RtmpIDSQBv/R.INSTALL2118717865cf/IPO/man/calculateXcmsSet.Rd:26: file link 'SnowParam' in package 'BiocParallel' does not exist and so has been treated as a topic
Rd warning: C:/Users/biocbuild/bbs-3.11-bioc/tmpdir/RtmpIDSQBv/R.INSTALL2118717865cf/IPO/man/calculateXcmsSet.Rd:53: file link 'findPeaks' in package 'xcms' does not exist and so has been treated as a topic
    combineParams                           html  
    createModel                             html  
    decode                                  html  
    findIsotopes.CAMERA                     html  
    findIsotopes.IPO                        html  
    getBbdParameter                         html  
    getCcdParameter                         html  
    getDefaultRetCorCenterSample            html  
    getDefaultRetGroupStartingParams        html  
    getDefaultXcmsSetStartingParams         html  
    getNormalizedResponse                   html  
    getRGTVValues                           html  
    optimizeRetGroup                        html  
    optimizeXcmsSet                         html  
Rd warning: C:/Users/biocbuild/bbs-3.11-bioc/tmpdir/RtmpIDSQBv/R.INSTALL2118717865cf/IPO/man/optimizeXcmsSet.Rd:31: file link 'SerialParam' in package 'BiocParallel' does not exist and so has been treated as a topic
Rd warning: C:/Users/biocbuild/bbs-3.11-bioc/tmpdir/RtmpIDSQBv/R.INSTALL2118717865cf/IPO/man/optimizeXcmsSet.Rd:32: file link 'MulticoreParam' in package 'BiocParallel' does not exist and so has been treated as a topic
Rd warning: C:/Users/biocbuild/bbs-3.11-bioc/tmpdir/RtmpIDSQBv/R.INSTALL2118717865cf/IPO/man/optimizeXcmsSet.Rd:33: file link 'SnowParam' in package 'BiocParallel' does not exist and so has been treated as a topic
    toMatrix                                html  
    typeCastParams                          html  
    writeParamsTable                        html  
    writeRScript                            html  
** building package indices
** installing vignettes
** testing if installed package can be loaded from temporary location
Warning: replacing previous import 'xcms::plot' by 'graphics::plot' when loading 'CAMERA'
** testing if installed package can be loaded from final location
Warning: replacing previous import 'xcms::plot' by 'graphics::plot' when loading 'CAMERA'
** testing if installed package keeps a record of temporary installation path

install for x64

* installing *source* package 'IPO' ...
** testing if installed package can be loaded
Warning: replacing previous import 'xcms::plot' by 'graphics::plot' when loading 'CAMERA'
* MD5 sums
packaged installation of 'IPO' as IPO_1.14.0.zip
* DONE (IPO)
* installing to library 'C:/Users/biocbuild/bbs-3.11-bioc/R/library'
package 'IPO' successfully unpacked and MD5 sums checked