Package: GlobalAncova

Version: 4.5.0

Command: rm -rf GlobalAncova.buildbin-libdir && mkdir GlobalAncova.buildbin-libdir && /Users/biocbuild/BBS/utils/build-universal.sh GlobalAncova_4.5.0.tar.gz /Library/Frameworks/R.framework/Versions/Current/Resources/bin/R GlobalAncova.buildbin-libdir

StartedAt: 2020-01-16 11:01:23 -0500 (Thu, 16 Jan 2020)

EndedAt: 2020-01-16 11:01:57 -0500 (Thu, 16 Jan 2020)

EllapsedTime: 34.3 seconds

RetCode: 0

Status:  OK

PackageFile: GlobalAncova_4.5.0.tgz

PackageFileSize: 1.458 MiB

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### Running command:
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###   rm -rf GlobalAncova.buildbin-libdir && mkdir GlobalAncova.buildbin-libdir && /Users/biocbuild/BBS/utils/build-universal.sh GlobalAncova_4.5.0.tar.gz /Library/Frameworks/R.framework/Versions/Current/Resources/bin/R GlobalAncova.buildbin-libdir
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>>>>>>> 
>>>>>>> INSTALLATION WITH 'R CMD INSTALL --preclean --no-multiarch --library=GlobalAncova.buildbin-libdir GlobalAncova_4.5.0.tar.gz'
>>>>>>> 

* installing *source* package ‘GlobalAncova’ ...
** using staged installation
** libs
clang -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG   -isysroot /Library/Developer/CommandLineTools/SDKs/MacOSX.sdk -I/usr/local/include   -fPIC  -Wall -g -O2  -c GlobalAncova.c -o GlobalAncova.o
clang -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG   -isysroot /Library/Developer/CommandLineTools/SDKs/MacOSX.sdk -I/usr/local/include   -fPIC  -Wall -g -O2  -c ludcmp.c -o ludcmp.o
clang -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG   -isysroot /Library/Developer/CommandLineTools/SDKs/MacOSX.sdk -I/usr/local/include   -fPIC  -Wall -g -O2  -c matrix.c -o matrix.o
clang -dynamiclib -Wl,-headerpad_max_install_names -undefined dynamic_lookup -single_module -multiply_defined suppress -L/Library/Frameworks/R.framework/Resources/lib -L/usr/local/lib -o GlobalAncova.so GlobalAncova.o ludcmp.o matrix.o -F/Library/Frameworks/R.framework/.. -framework R -Wl,-framework -Wl,CoreFoundation
installing to /Users/biocbuild/bbs-3.11-bioc/meat/GlobalAncova.buildbin-libdir/00LOCK-GlobalAncova/00new/GlobalAncova/libs
** R
** data
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
** building package indices
** installing vignettes
** testing if installed package can be loaded from temporary location
** checking absolute paths in shared objects and dynamic libraries
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path
* DONE (GlobalAncova)


>>>>>>> 
>>>>>>> FIXING LINKS FOR GlobalAncova.buildbin-libdir/GlobalAncova/libs//GlobalAncova.so
>>>>>>> 

install_name_tool -change "/usr/local/lib/libgcc_s.1.dylib" "/Library/Frameworks/R.framework/Versions/4.0/Resources/lib/libgcc_s.1.dylib" "GlobalAncova.buildbin-libdir/GlobalAncova/libs//GlobalAncova.so"
install_name_tool -change "/usr/local/lib/libgfortran.3.dylib" "/Library/Frameworks/R.framework/Versions/4.0/Resources/lib/libgfortran.3.dylib" "GlobalAncova.buildbin-libdir/GlobalAncova/libs//GlobalAncova.so"
install_name_tool -change "/usr/local/lib/libreadline.5.2.dylib" "/Library/Frameworks/R.framework/Versions/4.0/Resources/lib/libreadline.5.2.dylib" "GlobalAncova.buildbin-libdir/GlobalAncova/libs//GlobalAncova.so"
install_name_tool -change "/usr/local/lib/libreadline.dylib" "/Library/Frameworks/R.framework/Versions/4.0/Resources/lib/libreadline.dylib" "GlobalAncova.buildbin-libdir/GlobalAncova/libs//GlobalAncova.so"
install_name_tool -change "/usr/local/lib/libquadmath.0.dylib" "/Library/Frameworks/R.framework/Versions/4.0/Resources/lib/libquadmath.0.dylib" "GlobalAncova.buildbin-libdir/GlobalAncova/libs//GlobalAncova.so"