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INSTALL report for Glimma on tokay2

This page was generated on 2020-10-17 11:56:42 -0400 (Sat, 17 Oct 2020).

TO THE DEVELOPERS/MAINTAINERS OF THE Glimma PACKAGE: Please make sure to use the following settings in order to reproduce any error or warning you see on this page.
Package 738/1905HostnameOS / ArchINSTALLBUILDCHECKBUILD BIN
Glimma 1.16.0
Shian Su
Snapshot Date: 2020-10-16 14:40:19 -0400 (Fri, 16 Oct 2020)
URL: https://git.bioconductor.org/packages/Glimma
Branch: RELEASE_3_11
Last Commit: f54795c
Last Changed Date: 2020-04-27 14:56:38 -0400 (Mon, 27 Apr 2020)
malbec2 Linux (Ubuntu 18.04.4 LTS) / x86_64  OK  OK  OK UNNEEDED, same version exists in internal repository
tokay2 Windows Server 2012 R2 Standard / x64 [ OK ] OK  OK  OK UNNEEDED, same version exists in internal repository
machv2 macOS 10.14.6 Mojave / x86_64  OK  OK  OK  OK UNNEEDED, same version exists in internal repository

Summary

Package: Glimma
Version: 1.16.0
Command: C:\cygwin\bin\curl.exe -O https://malbec2.bioconductor.org/BBS/3.11/bioc/src/contrib/Glimma_1.16.0.tar.gz && rm -rf Glimma.buildbin-libdir && mkdir Glimma.buildbin-libdir && C:\Users\biocbuild\bbs-3.11-bioc\R\bin\R.exe CMD INSTALL --merge-multiarch --build --library=Glimma.buildbin-libdir Glimma_1.16.0.tar.gz && C:\Users\biocbuild\bbs-3.11-bioc\R\bin\R.exe CMD INSTALL Glimma_1.16.0.zip && rm Glimma_1.16.0.tar.gz Glimma_1.16.0.zip
StartedAt: 2020-10-16 17:21:58 -0400 (Fri, 16 Oct 2020)
EndedAt: 2020-10-16 17:23:04 -0400 (Fri, 16 Oct 2020)
EllapsedTime: 66.0 seconds
RetCode: 0
Status:  OK  

Command output

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###
### Running command:
###
###   C:\cygwin\bin\curl.exe -O https://malbec2.bioconductor.org/BBS/3.11/bioc/src/contrib/Glimma_1.16.0.tar.gz && rm -rf Glimma.buildbin-libdir && mkdir Glimma.buildbin-libdir && C:\Users\biocbuild\bbs-3.11-bioc\R\bin\R.exe CMD INSTALL --merge-multiarch --build --library=Glimma.buildbin-libdir Glimma_1.16.0.tar.gz && C:\Users\biocbuild\bbs-3.11-bioc\R\bin\R.exe CMD INSTALL Glimma_1.16.0.zip && rm Glimma_1.16.0.tar.gz Glimma_1.16.0.zip
###
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  % Total    % Received % Xferd  Average Speed   Time    Time     Time  Current
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  0     0    0     0    0     0      0      0 --:--:-- --:--:-- --:--:--     0
 51 3283k   51 1680k    0     0  12.4M      0 --:--:-- --:--:-- --:--:-- 13.0M
100 3283k  100 3283k    0     0  21.3M      0 --:--:-- --:--:-- --:--:-- 22.2M

install for i386

* installing *source* package 'Glimma' ...
** using staged installation
** R
** data
*** moving datasets to lazyload DB
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
  converting help for package 'Glimma'
    finding HTML links ... done
    arraydata                               html  
    as.hexcol                               html  
    glBar                                   html  
    glBar.default                           html  
    glMDPlot.DESeqDataSet                   html  
    glMDPlot.DESeqResults                   html  
    glMDPlot.DGEExact                       html  
    glMDPlot.DGELRT                         html  
    glMDPlot.MArrayLM                       html  
    glMDPlot                                html  
    glMDPlot.default                        html  
    glMDRmd                                 html  
    glMDSPlot.DESeqDataSet                  html  
    glMDSPlot.DGEList                       html  
    glMDSPlot                               html  
    glMDSPlot.default                       html  
    glScatter                               html  
    glScatter.default                       html  
    glTable                                 html  
    glXYPlot                                html  
    glimma                                  html  
    gllink                                  html  
    gltablink                               html  
    is.hex                                  html  
    lymphomaRNAseq                          html  
    makeJson                                html  
    makeJson.data.frame                     html  
    makeJson.jschart                        html  
** building package indices
** installing vignettes
** testing if installed package can be loaded from temporary location
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path

install for x64

* installing *source* package 'Glimma' ...
** testing if installed package can be loaded
* MD5 sums
packaged installation of 'Glimma' as Glimma_1.16.0.zip
* DONE (Glimma)
* installing to library 'C:/Users/biocbuild/bbs-3.11-bioc/R/library'
package 'Glimma' successfully unpacked and MD5 sums checked