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BUILD BIN report for GeneSelectMMD on celaya2

This page was generated on 2020-01-16 13:31:49 -0500 (Thu, 16 Jan 2020).

Package 663/1818HostnameOS / ArchINSTALLBUILDCHECKBUILD BIN
GeneSelectMMD 2.31.0
Weiliang Qiu
Snapshot Date: 2020-01-15 16:46:30 -0500 (Wed, 15 Jan 2020)
URL: https://git.bioconductor.org/packages/GeneSelectMMD
Branch: master
Last Commit: daa4f78
Last Changed Date: 2019-10-29 13:34:54 -0500 (Tue, 29 Oct 2019)
malbec2 Linux (Ubuntu 18.04.3 LTS) / x86_64  OK  OK  WARNINGS UNNEEDED, same version exists in internal repository
tokay2 Windows Server 2012 R2 Standard / x64  OK  OK  OK  OK UNNEEDED, same version exists in internal repository
celaya2 OS X 10.11.6 El Capitan / x86_64  OK  OK  WARNINGS [ OK ]UNNEEDED, same version exists in internal repository

Summary

Package: GeneSelectMMD
Version: 2.31.0
Command: rm -rf GeneSelectMMD.buildbin-libdir && mkdir GeneSelectMMD.buildbin-libdir && /Users/biocbuild/BBS/utils/build-universal.sh GeneSelectMMD_2.31.0.tar.gz /Library/Frameworks/R.framework/Versions/Current/Resources/bin/R GeneSelectMMD.buildbin-libdir
StartedAt: 2020-01-16 10:58:47 -0500 (Thu, 16 Jan 2020)
EndedAt: 2020-01-16 10:59:13 -0500 (Thu, 16 Jan 2020)
EllapsedTime: 26.4 seconds
RetCode: 0
Status:  OK 
PackageFile: GeneSelectMMD_2.31.0.tgz
PackageFileSize: 449.2 KiB

Command output

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###
### Running command:
###
###   rm -rf GeneSelectMMD.buildbin-libdir && mkdir GeneSelectMMD.buildbin-libdir && /Users/biocbuild/BBS/utils/build-universal.sh GeneSelectMMD_2.31.0.tar.gz /Library/Frameworks/R.framework/Versions/Current/Resources/bin/R GeneSelectMMD.buildbin-libdir
###
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>>>>>>> 
>>>>>>> INSTALLATION WITH 'R CMD INSTALL --preclean --no-multiarch --library=GeneSelectMMD.buildbin-libdir GeneSelectMMD_2.31.0.tar.gz'
>>>>>>> 

* installing *source* package ‘GeneSelectMMD’ ...
** using staged installation
** libs
gfortran  -fPIC  -Wall -g -O2  -c Qfunc.f -o Qfunc.o
gfortran  -fPIC  -Wall -g -O2  -c blas.f -o blas.o
clang -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG   -isysroot /Library/Developer/CommandLineTools/SDKs/MacOSX.sdk -I/usr/local/include   -fPIC  -Wall -g -O2  -c isnan.c -o isnan.o
gfortran  -fPIC  -Wall -g -O2  -c lbfgsb.f -o lbfgsb.o
lbfgsb.f:1491:0:

                t(nbreak) = tu/neggi
 
Warning: ‘tu’ may be used uninitialized in this function [-Wmaybe-uninitialized]
lbfgsb.f:1482:0:

                t(nbreak) = tl/(-neggi)
 
Warning: ‘tl’ may be used uninitialized in this function [-Wmaybe-uninitialized]
gfortran  -fPIC  -Wall -g -O2  -c lbfgsbDriver.f -o lbfgsbDriver.o
gfortran  -fPIC  -Wall -g -O2  -c linpack.f -o linpack.o
gfortran  -fPIC  -Wall -g -O2  -c llkhFun.f -o llkhFun.o
gfortran  -fPIC  -Wall -g -O2  -c myTtest.f -o myTtest.o
gfortran  -fPIC  -Wall -g -O2  -c paraEstLoop.f -o paraEstLoop.o
clang -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG   -isysroot /Library/Developer/CommandLineTools/SDKs/MacOSX.sdk -I/usr/local/include   -fPIC  -Wall -g -O2  -c pt.c -o pt.o
gfortran  -fPIC  -Wall -g -O2  -c timer.f -o timer.o
gfortran  -fPIC  -Wall -g -O2  -c wiFun.f -o wiFun.o
clang -dynamiclib -Wl,-headerpad_max_install_names -undefined dynamic_lookup -single_module -multiply_defined suppress -L/Library/Frameworks/R.framework/Resources/lib -L/usr/local/lib -o GeneSelectMMD.so Qfunc.o blas.o isnan.o lbfgsb.o lbfgsbDriver.o linpack.o llkhFun.o myTtest.o paraEstLoop.o pt.o timer.o wiFun.o -L/usr/local/gfortran/lib/gcc/x86_64-apple-darwin15/6.1.0 -L/usr/local/gfortran/lib -lgfortran -lquadmath -lm -F/Library/Frameworks/R.framework/.. -framework R -Wl,-framework -Wl,CoreFoundation
ld: warning: could not create compact unwind for _lbfgsbdriver_: stack subq instruction is too different from dwarf stack size
installing to /Users/biocbuild/bbs-3.11-bioc/meat/GeneSelectMMD.buildbin-libdir/00LOCK-GeneSelectMMD/00new/GeneSelectMMD/libs
** R
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
** building package indices
** installing vignettes
** testing if installed package can be loaded from temporary location
** checking absolute paths in shared objects and dynamic libraries
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path
* DONE (GeneSelectMMD)


>>>>>>> 
>>>>>>> FIXING LINKS FOR GeneSelectMMD.buildbin-libdir/GeneSelectMMD/libs//GeneSelectMMD.so
>>>>>>> 

install_name_tool -change "/usr/local/lib/libgcc_s.1.dylib" "/Library/Frameworks/R.framework/Versions/4.0/Resources/lib/libgcc_s.1.dylib" "GeneSelectMMD.buildbin-libdir/GeneSelectMMD/libs//GeneSelectMMD.so"
install_name_tool -change "/usr/local/lib/libgfortran.3.dylib" "/Library/Frameworks/R.framework/Versions/4.0/Resources/lib/libgfortran.3.dylib" "GeneSelectMMD.buildbin-libdir/GeneSelectMMD/libs//GeneSelectMMD.so"
install_name_tool -change "/usr/local/lib/libreadline.5.2.dylib" "/Library/Frameworks/R.framework/Versions/4.0/Resources/lib/libreadline.5.2.dylib" "GeneSelectMMD.buildbin-libdir/GeneSelectMMD/libs//GeneSelectMMD.so"
install_name_tool -change "/usr/local/lib/libreadline.dylib" "/Library/Frameworks/R.framework/Versions/4.0/Resources/lib/libreadline.dylib" "GeneSelectMMD.buildbin-libdir/GeneSelectMMD/libs//GeneSelectMMD.so"
install_name_tool -change "/usr/local/lib/libquadmath.0.dylib" "/Library/Frameworks/R.framework/Versions/4.0/Resources/lib/libquadmath.0.dylib" "GeneSelectMMD.buildbin-libdir/GeneSelectMMD/libs//GeneSelectMMD.so"
install_name_tool -change "/usr/local/gfortran/lib/libgfortran.3.dylib" "/Library/Frameworks/R.framework/Versions/4.0/Resources/lib/libgfortran.3.dylib" "GeneSelectMMD.buildbin-libdir/GeneSelectMMD/libs//GeneSelectMMD.so"
install_name_tool -change "/usr/local/gfortran/lib/libquadmath.0.dylib" "/Library/Frameworks/R.framework/Versions/4.0/Resources/lib/libquadmath.0.dylib" "GeneSelectMMD.buildbin-libdir/GeneSelectMMD/libs//GeneSelectMMD.so"