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BUILD BIN report for CNORdt on celaya2

This page was generated on 2020-01-16 13:35:45 -0500 (Thu, 16 Jan 2020).

Package 319/1818HostnameOS / ArchINSTALLBUILDCHECKBUILD BIN
CNORdt 1.29.0
A. MacNamara
Snapshot Date: 2020-01-15 16:46:30 -0500 (Wed, 15 Jan 2020)
URL: https://git.bioconductor.org/packages/CNORdt
Branch: master
Last Commit: fa39fbf
Last Changed Date: 2019-10-29 13:36:23 -0500 (Tue, 29 Oct 2019)
malbec2 Linux (Ubuntu 18.04.3 LTS) / x86_64  OK  OK  OK UNNEEDED, same version exists in internal repository
tokay2 Windows Server 2012 R2 Standard / x64  OK  OK  OK  OK UNNEEDED, same version exists in internal repository
celaya2 OS X 10.11.6 El Capitan / x86_64  OK  OK  OK [ OK ]UNNEEDED, same version exists in internal repository

Summary

Package: CNORdt
Version: 1.29.0
Command: rm -rf CNORdt.buildbin-libdir && mkdir CNORdt.buildbin-libdir && /Users/biocbuild/BBS/utils/build-universal.sh CNORdt_1.29.0.tar.gz /Library/Frameworks/R.framework/Versions/Current/Resources/bin/R CNORdt.buildbin-libdir
StartedAt: 2020-01-16 10:39:51 -0500 (Thu, 16 Jan 2020)
EndedAt: 2020-01-16 10:40:12 -0500 (Thu, 16 Jan 2020)
EllapsedTime: 20.4 seconds
RetCode: 0
Status:  OK 
PackageFile: CNORdt_1.29.0.tgz
PackageFileSize: 261 KiB

Command output

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###
### Running command:
###
###   rm -rf CNORdt.buildbin-libdir && mkdir CNORdt.buildbin-libdir && /Users/biocbuild/BBS/utils/build-universal.sh CNORdt_1.29.0.tar.gz /Library/Frameworks/R.framework/Versions/Current/Resources/bin/R CNORdt.buildbin-libdir
###
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>>>>>>> 
>>>>>>> INSTALLATION WITH 'R CMD INSTALL --preclean --no-multiarch --library=CNORdt.buildbin-libdir CNORdt_1.29.0.tar.gz'
>>>>>>> 

* installing *source* package ‘CNORdt’ ...
** using staged installation
** libs
clang -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG   -isysroot /Library/Developer/CommandLineTools/SDKs/MacOSX.sdk -I/usr/local/include   -fPIC  -Wall -g -O2  -c simulatorDT.c -o simulatorDT.o
simulatorDT.c:243:19: warning: equality comparison with extraneous parentheses [-Wparentheses-equality]
                        if((track_cond == nCond)) {
                            ~~~~~~~~~~~^~~~~~~~
simulatorDT.c:243:19: note: remove extraneous parentheses around the comparison to silence this warning
                        if((track_cond == nCond)) {
                           ~           ^       ~
simulatorDT.c:243:19: note: use '=' to turn this equality comparison into an assignment
                        if((track_cond == nCond)) {
                                       ^~
                                       =
simulatorDT.c:53:6: warning: unused variable 'nSignals' [-Wunused-variable]
        int nSignals = INTEGER(nSignals_in)[0];
            ^
simulatorDT.c:55:6: warning: unused variable 'nTimes' [-Wunused-variable]
        int nTimes = INTEGER(nTimes_in)[0];
            ^
3 warnings generated.
clang -dynamiclib -Wl,-headerpad_max_install_names -undefined dynamic_lookup -single_module -multiply_defined suppress -L/Library/Frameworks/R.framework/Resources/lib -L/usr/local/lib -o CNORdt.so simulatorDT.o -F/Library/Frameworks/R.framework/.. -framework R -Wl,-framework -Wl,CoreFoundation
installing to /Users/biocbuild/bbs-3.11-bioc/meat/CNORdt.buildbin-libdir/00LOCK-CNORdt/00new/CNORdt/libs
** R
** data
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
** building package indices
** installing vignettes
** testing if installed package can be loaded from temporary location
** checking absolute paths in shared objects and dynamic libraries
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path
* DONE (CNORdt)


>>>>>>> 
>>>>>>> FIXING LINKS FOR CNORdt.buildbin-libdir/CNORdt/libs//CNORdt.so
>>>>>>> 

install_name_tool -change "/usr/local/lib/libgcc_s.1.dylib" "/Library/Frameworks/R.framework/Versions/4.0/Resources/lib/libgcc_s.1.dylib" "CNORdt.buildbin-libdir/CNORdt/libs//CNORdt.so"
install_name_tool -change "/usr/local/lib/libgfortran.3.dylib" "/Library/Frameworks/R.framework/Versions/4.0/Resources/lib/libgfortran.3.dylib" "CNORdt.buildbin-libdir/CNORdt/libs//CNORdt.so"
install_name_tool -change "/usr/local/lib/libreadline.5.2.dylib" "/Library/Frameworks/R.framework/Versions/4.0/Resources/lib/libreadline.5.2.dylib" "CNORdt.buildbin-libdir/CNORdt/libs//CNORdt.so"
install_name_tool -change "/usr/local/lib/libreadline.dylib" "/Library/Frameworks/R.framework/Versions/4.0/Resources/lib/libreadline.dylib" "CNORdt.buildbin-libdir/CNORdt/libs//CNORdt.so"
install_name_tool -change "/usr/local/lib/libquadmath.0.dylib" "/Library/Frameworks/R.framework/Versions/4.0/Resources/lib/libquadmath.0.dylib" "CNORdt.buildbin-libdir/CNORdt/libs//CNORdt.so"