Back to Multiple platform build/check report for BioC 3.11
ABCDEFGHIJKLMNOPQRSTU[V]WXYZ

INSTALL report for vsn on tokay2

This page was generated on 2020-10-17 11:57:59 -0400 (Sat, 17 Oct 2020).

TO THE DEVELOPERS/MAINTAINERS OF THE vsn PACKAGE: Please make sure to use the following settings in order to reproduce any error or warning you see on this page.
Package 1877/1905HostnameOS / ArchINSTALLBUILDCHECKBUILD BIN
vsn 3.56.0
Wolfgang Huber
Snapshot Date: 2020-10-16 14:40:19 -0400 (Fri, 16 Oct 2020)
URL: https://git.bioconductor.org/packages/vsn
Branch: RELEASE_3_11
Last Commit: 7456991
Last Changed Date: 2020-04-27 14:08:11 -0400 (Mon, 27 Apr 2020)
malbec2 Linux (Ubuntu 18.04.4 LTS) / x86_64  OK  OK  OK UNNEEDED, same version exists in internal repository
tokay2 Windows Server 2012 R2 Standard / x64 [ OK ] OK  WARNINGS  NA 
machv2 macOS 10.14.6 Mojave / x86_64  OK  OK  OK  OK UNNEEDED, same version exists in internal repository

Summary

Package: vsn
Version: 3.56.0
Command: C:\cygwin\bin\curl.exe -O https://malbec2.bioconductor.org/BBS/3.11/bioc/src/contrib/vsn_3.56.0.tar.gz && rm -rf vsn.buildbin-libdir && mkdir vsn.buildbin-libdir && C:\Users\biocbuild\bbs-3.11-bioc\R\bin\R.exe CMD INSTALL --merge-multiarch --build --library=vsn.buildbin-libdir vsn_3.56.0.tar.gz && C:\Users\biocbuild\bbs-3.11-bioc\R\bin\R.exe CMD INSTALL vsn_3.56.0.zip && rm vsn_3.56.0.tar.gz vsn_3.56.0.zip
StartedAt: 2020-10-16 17:17:16 -0400 (Fri, 16 Oct 2020)
EndedAt: 2020-10-16 17:18:06 -0400 (Fri, 16 Oct 2020)
EllapsedTime: 50.6 seconds
RetCode: 0
Status:  OK  

Command output

##############################################################################
##############################################################################
###
### Running command:
###
###   C:\cygwin\bin\curl.exe -O https://malbec2.bioconductor.org/BBS/3.11/bioc/src/contrib/vsn_3.56.0.tar.gz && rm -rf vsn.buildbin-libdir && mkdir vsn.buildbin-libdir && C:\Users\biocbuild\bbs-3.11-bioc\R\bin\R.exe CMD INSTALL --merge-multiarch --build --library=vsn.buildbin-libdir vsn_3.56.0.tar.gz && C:\Users\biocbuild\bbs-3.11-bioc\R\bin\R.exe CMD INSTALL vsn_3.56.0.zip && rm vsn_3.56.0.tar.gz vsn_3.56.0.zip
###
##############################################################################
##############################################################################


  % Total    % Received % Xferd  Average Speed   Time    Time     Time  Current
                                 Dload  Upload   Total   Spent    Left  Speed

  0     0    0     0    0     0      0      0 --:--:-- --:--:-- --:--:--     0
100  436k  100  436k    0     0  6672k      0 --:--:-- --:--:-- --:--:-- 7520k

install for i386

* installing *source* package 'vsn' ...
** using staged installation
** libs
"C:/rtools40/mingw32/bin/"gcc  -I"C:/Users/BIOCBU~1/BBS-3~1.11-/R/include" -DNDEBUG     -I"C:/extsoft/include"     -O2 -Wall  -std=gnu99 -mfpmath=sse -msse2 -mstackrealign -c init.c -o init.o
"C:/rtools40/mingw32/bin/"gcc  -I"C:/Users/BIOCBU~1/BBS-3~1.11-/R/include" -DNDEBUG     -I"C:/extsoft/include"     -O2 -Wall  -std=gnu99 -mfpmath=sse -msse2 -mstackrealign -c vsn.c -o vsn.o
"C:/rtools40/mingw32/bin/"gcc  -I"C:/Users/BIOCBU~1/BBS-3~1.11-/R/include" -DNDEBUG     -I"C:/extsoft/include"     -O2 -Wall  -std=gnu99 -mfpmath=sse -msse2 -mstackrealign -c vsn2.c -o vsn2.o
C:/rtools40/mingw32/bin/gcc -shared -s -static-libgcc -o vsn.dll tmp.def init.o vsn.o vsn2.o -LC:/extsoft/lib/i386 -LC:/extsoft/lib -LC:/Users/BIOCBU~1/BBS-3~1.11-/R/bin/i386 -lR
installing to C:/Users/biocbuild/bbs-3.11-bioc/meat/vsn.buildbin-libdir/00LOCK-vsn/00new/vsn/libs/i386
** R
** data
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
  converting help for package 'vsn'
    finding HTML links ... done
    class.vsn                               html  
    class.vsnInput                          html  
    justvsn                                 html  
    kidney                                  html  
    lymphoma                                html  
    meanSdPlot                              html  
Rd warning: C:/Users/biocbuild/bbs-3.11-bioc/tmpdir/RtmpuKOxyy/R.INSTALL14b43f424d76/vsn/man/meanSdPlot.Rd:43: file link 'stat_binhex' in package 'ggplot2' does not exist and so has been treated as a topic
Rd warning: C:/Users/biocbuild/bbs-3.11-bioc/tmpdir/RtmpuKOxyy/R.INSTALL14b43f424d76/vsn/man/meanSdPlot.Rd:44: file link 'stat_binhex' in package 'ggplot2' does not exist and so has been treated as a topic
    normalize.AffyBatch.vsn                 html  
    sagmbSimulateData                       html  
    scalingFactorTransformation             html  
    vsn-package                             html  
    vsn2                                    html  
    vsn2trsf                                html  
    vsnLikelihood                           html  
** building package indices
** installing vignettes
** testing if installed package can be loaded from temporary location
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path

install for x64

* installing *source* package 'vsn' ...
** libs
"C:/rtools40/mingw64/bin/"gcc  -I"C:/Users/BIOCBU~1/BBS-3~1.11-/R/include" -DNDEBUG     -I"C:/extsoft/include"     -O2 -Wall  -std=gnu99 -mfpmath=sse -msse2 -mstackrealign -c init.c -o init.o
"C:/rtools40/mingw64/bin/"gcc  -I"C:/Users/BIOCBU~1/BBS-3~1.11-/R/include" -DNDEBUG     -I"C:/extsoft/include"     -O2 -Wall  -std=gnu99 -mfpmath=sse -msse2 -mstackrealign -c vsn.c -o vsn.o
"C:/rtools40/mingw64/bin/"gcc  -I"C:/Users/BIOCBU~1/BBS-3~1.11-/R/include" -DNDEBUG     -I"C:/extsoft/include"     -O2 -Wall  -std=gnu99 -mfpmath=sse -msse2 -mstackrealign -c vsn2.c -o vsn2.o
C:/rtools40/mingw64/bin/gcc -shared -s -static-libgcc -o vsn.dll tmp.def init.o vsn.o vsn2.o -LC:/extsoft/lib/x64 -LC:/extsoft/lib -LC:/Users/BIOCBU~1/BBS-3~1.11-/R/bin/x64 -lR
installing to C:/Users/biocbuild/bbs-3.11-bioc/meat/vsn.buildbin-libdir/vsn/libs/x64
** testing if installed package can be loaded
* MD5 sums
packaged installation of 'vsn' as vsn_3.56.0.zip
* DONE (vsn)
* installing to library 'C:/Users/biocbuild/bbs-3.11-bioc/R/library'
package 'vsn' successfully unpacked and MD5 sums checked