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INSTALL report for seqsetvis on tokay2

This page was generated on 2020-10-17 11:57:48 -0400 (Sat, 17 Oct 2020).

TO THE DEVELOPERS/MAINTAINERS OF THE seqsetvis PACKAGE: Please make sure to use the following settings in order to reproduce any error or warning you see on this page.
Package 1634/1905HostnameOS / ArchINSTALLBUILDCHECKBUILD BIN
seqsetvis 1.8.0
Joseph R Boyd
Snapshot Date: 2020-10-16 14:40:19 -0400 (Fri, 16 Oct 2020)
URL: https://git.bioconductor.org/packages/seqsetvis
Branch: RELEASE_3_11
Last Commit: e646a13
Last Changed Date: 2020-04-27 15:15:20 -0400 (Mon, 27 Apr 2020)
malbec2 Linux (Ubuntu 18.04.4 LTS) / x86_64  OK  OK  OK UNNEEDED, same version exists in internal repository
tokay2 Windows Server 2012 R2 Standard / x64 [ OK ] OK  OK  NA 
machv2 macOS 10.14.6 Mojave / x86_64  OK  OK  OK  OK UNNEEDED, same version exists in internal repository

Summary

Package: seqsetvis
Version: 1.8.0
Command: C:\cygwin\bin\curl.exe -O https://malbec2.bioconductor.org/BBS/3.11/bioc/src/contrib/seqsetvis_1.8.0.tar.gz && rm -rf seqsetvis.buildbin-libdir && mkdir seqsetvis.buildbin-libdir && C:\Users\biocbuild\bbs-3.11-bioc\R\bin\R.exe CMD INSTALL --merge-multiarch --build --library=seqsetvis.buildbin-libdir seqsetvis_1.8.0.tar.gz && C:\Users\biocbuild\bbs-3.11-bioc\R\bin\R.exe CMD INSTALL seqsetvis_1.8.0.zip && rm seqsetvis_1.8.0.tar.gz seqsetvis_1.8.0.zip
StartedAt: 2020-10-16 19:00:12 -0400 (Fri, 16 Oct 2020)
EndedAt: 2020-10-16 19:01:56 -0400 (Fri, 16 Oct 2020)
EllapsedTime: 103.6 seconds
RetCode: 0
Status:  OK  

Command output

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###
### Running command:
###
###   C:\cygwin\bin\curl.exe -O https://malbec2.bioconductor.org/BBS/3.11/bioc/src/contrib/seqsetvis_1.8.0.tar.gz && rm -rf seqsetvis.buildbin-libdir && mkdir seqsetvis.buildbin-libdir && C:\Users\biocbuild\bbs-3.11-bioc\R\bin\R.exe CMD INSTALL --merge-multiarch --build --library=seqsetvis.buildbin-libdir seqsetvis_1.8.0.tar.gz && C:\Users\biocbuild\bbs-3.11-bioc\R\bin\R.exe CMD INSTALL seqsetvis_1.8.0.zip && rm seqsetvis_1.8.0.tar.gz seqsetvis_1.8.0.zip
###
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100  536k  100  536k    0     0  7865k      0 --:--:-- --:--:-- --:--:-- 8656k

install for i386

* installing *source* package 'seqsetvis' ...
** using staged installation
** R
** data
*** moving datasets to lazyload DB
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
  converting help for package 'seqsetvis'
    finding HTML links ... done
    Bcell_peaks                             html  
    CTCF_in_10a_bigWig_urls                 html  
    CTCF_in_10a_data                        html  
    CTCF_in_10a_narrowPeak_grs              html  
    CTCF_in_10a_narrowPeak_urls             html  
    CTCF_in_10a_overlaps_gr                 html  
    CTCF_in_10a_profiles_dt                 html  
    CTCF_in_10a_profiles_gr                 html  
    append_ynorm                            html  
    applySpline                             html  
    calc_norm_factors                       html  
    centerAtMax                             html  
    centerFixedSizeGRanges                  html  
    chromHMM_demo_bw_states_gr              html  
    chromHMM_demo_chain_url                 html  
    chromHMM_demo_data                      html  
    chromHMM_demo_overlaps_gr               html  
    chromHMM_demo_segmentation_url          html  
    chromHMM_demo_state_colors              html  
    chromHMM_demo_state_total_widths        html  
    clusteringKmeans                        html  
    clusteringKmeansNestedHclust            html  
    col2hex                                 html  
    collapse_gr                             html  
    convert_collapsed_coord                 html  
    crossCorrByRle                          html  
    dot-expand_cigar_dt                     html  
    dot-expand_cigar_dt_recursive           html  
    dot-rm_dupes                            html  
    dot-rm_dupesPE                          html  
    easyLoad_bed                            html  
    easyLoad_broadPeak                      html  
    easyLoad_narrowPeak                     html  
    expandCigar                             html  
    fetchBam                                html  
    fragLen_calcStranded                    html  
    fragLen_fromMacs2Xls                    html  
    getReadLength                           html  
    ggellipse                               html  
    harmonize_seqlengths                    html  
    prepare_fetch_GRanges                   html  
    quantileGRangesWidth                    html  
    safeBrew                                html  
    seqsetvis-package                       html  
    set_list2memb                           html  
    shift_anchor                            html  
    ssvFactorizeMembTable                   html  
    ssvFeatureBars                          html  
    ssvFeatureBinaryHeatmap                 html  
    ssvFeatureEuler                         html  
    ssvFeaturePie                           html  
    ssvFeatureVenn                          html  
    ssvFetchBam                             html  
    ssvFetchBam.single                      html  
    ssvFetchBamPE                           html  
    ssvFetchBamPE.single                    html  
    ssvFetchBigwig                          html  
    ssvFetchBigwig.single                   html  
    ssvFetchGRanges                         html  
    ssvFetchSignal                          html  
    ssvMakeMembTable-methods                html  
    ssvOverlapIntervalSets                  html  
    ssvSignalBandedQuantiles                html  
    ssvSignalClustering                     html  
    ssvSignalHeatmap                        html  
    ssvSignalLineplot                       html  
    ssvSignalLineplotAgg                    html  
    ssvSignalScatterplot                    html  
    test_peaks                              html  
    viewGRangesWinSample_dt                 html  
    viewGRangesWinSummary_dt                html  
** building package indices
** installing vignettes
** testing if installed package can be loaded from temporary location
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path

install for x64

* installing *source* package 'seqsetvis' ...
** testing if installed package can be loaded
* MD5 sums
packaged installation of 'seqsetvis' as seqsetvis_1.8.0.zip
* DONE (seqsetvis)
* installing to library 'C:/Users/biocbuild/bbs-3.11-bioc/R/library'
package 'seqsetvis' successfully unpacked and MD5 sums checked