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INSTALL report for seqCAT on tokay2

This page was generated on 2020-10-17 11:57:47 -0400 (Sat, 17 Oct 2020).

TO THE DEVELOPERS/MAINTAINERS OF THE seqCAT PACKAGE: Please make sure to use the following settings in order to reproduce any error or warning you see on this page.
Package 1627/1905HostnameOS / ArchINSTALLBUILDCHECKBUILD BIN
seqCAT 1.10.0
Erik Fasterius
Snapshot Date: 2020-10-16 14:40:19 -0400 (Fri, 16 Oct 2020)
URL: https://git.bioconductor.org/packages/seqCAT
Branch: RELEASE_3_11
Last Commit: 651738c
Last Changed Date: 2020-04-27 15:10:31 -0400 (Mon, 27 Apr 2020)
malbec2 Linux (Ubuntu 18.04.4 LTS) / x86_64  OK  OK  OK UNNEEDED, same version exists in internal repository
tokay2 Windows Server 2012 R2 Standard / x64 [ OK ] OK  OK  OK 
machv2 macOS 10.14.6 Mojave / x86_64  OK  OK  OK  OK UNNEEDED, same version exists in internal repository

Summary

Package: seqCAT
Version: 1.10.0
Command: C:\cygwin\bin\curl.exe -O https://malbec2.bioconductor.org/BBS/3.11/bioc/src/contrib/seqCAT_1.10.0.tar.gz && rm -rf seqCAT.buildbin-libdir && mkdir seqCAT.buildbin-libdir && C:\Users\biocbuild\bbs-3.11-bioc\R\bin\R.exe CMD INSTALL --merge-multiarch --build --library=seqCAT.buildbin-libdir seqCAT_1.10.0.tar.gz && C:\Users\biocbuild\bbs-3.11-bioc\R\bin\R.exe CMD INSTALL seqCAT_1.10.0.zip && rm seqCAT_1.10.0.tar.gz seqCAT_1.10.0.zip
StartedAt: 2020-10-16 19:14:37 -0400 (Fri, 16 Oct 2020)
EndedAt: 2020-10-16 19:16:14 -0400 (Fri, 16 Oct 2020)
EllapsedTime: 97.5 seconds
RetCode: 0
Status:  OK  

Command output

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###
### Running command:
###
###   C:\cygwin\bin\curl.exe -O https://malbec2.bioconductor.org/BBS/3.11/bioc/src/contrib/seqCAT_1.10.0.tar.gz && rm -rf seqCAT.buildbin-libdir && mkdir seqCAT.buildbin-libdir && C:\Users\biocbuild\bbs-3.11-bioc\R\bin\R.exe CMD INSTALL --merge-multiarch --build --library=seqCAT.buildbin-libdir seqCAT_1.10.0.tar.gz && C:\Users\biocbuild\bbs-3.11-bioc\R\bin\R.exe CMD INSTALL seqCAT_1.10.0.zip && rm seqCAT_1.10.0.tar.gz seqCAT_1.10.0.zip
###
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100 2405k  100 2405k    0     0  11.2M      0 --:--:-- --:--:-- --:--:-- 11.6M

install for i386

* installing *source* package 'seqCAT' ...
** using staged installation
** R
** data
*** moving datasets to lazyload DB
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
  converting help for package 'seqCAT'
    finding HTML links ... done
    calculate_similarity                    html  
    compare_many                            html  
    compare_profiles                        html  
    create_profile                          html  
    create_profiles                         html  
    filter_duplicates                       html  
    filter_variants                         html  
    list_cosmic                             html  
    list_variants                           html  
    plot_heatmap                            html  
    plot_impacts                            html  
    plot_variant_list                       html  
    read_cosmic                             html  
    read_profile                            html  
    read_profiles                           html  
    seqCAT                                  html  
    test_comparison                         html  
    test_profile_1                          html  
    test_profile_2                          html  
    test_profile_3                          html  
    test_similarities                       html  
    test_variant_list                       html  
    write_profile                           html  
    write_profiles                          html  
*** copying figures
** building package indices
** installing vignettes
** testing if installed package can be loaded from temporary location
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path

install for x64

* installing *source* package 'seqCAT' ...
** testing if installed package can be loaded
* MD5 sums
packaged installation of 'seqCAT' as seqCAT_1.10.0.zip
* DONE (seqCAT)
* installing to library 'C:/Users/biocbuild/bbs-3.11-bioc/R/library'
package 'seqCAT' successfully unpacked and MD5 sums checked