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INSTALL report for scone on tokay2

This page was generated on 2020-10-17 11:57:46 -0400 (Sat, 17 Oct 2020).

TO THE DEVELOPERS/MAINTAINERS OF THE scone PACKAGE: Please make sure to use the following settings in order to reproduce any error or warning you see on this page.
Package 1603/1905HostnameOS / ArchINSTALLBUILDCHECKBUILD BIN
scone 1.12.0
Davide Risso
Snapshot Date: 2020-10-16 14:40:19 -0400 (Fri, 16 Oct 2020)
URL: https://git.bioconductor.org/packages/scone
Branch: RELEASE_3_11
Last Commit: a562a9e
Last Changed Date: 2020-04-27 15:04:21 -0400 (Mon, 27 Apr 2020)
malbec2 Linux (Ubuntu 18.04.4 LTS) / x86_64  OK  OK  OK UNNEEDED, same version exists in internal repository
tokay2 Windows Server 2012 R2 Standard / x64 [ OK ] OK  WARNINGS  OK 
machv2 macOS 10.14.6 Mojave / x86_64  OK  OK  OK  OK UNNEEDED, same version exists in internal repository

Summary

Package: scone
Version: 1.12.0
Command: C:\cygwin\bin\curl.exe -O https://malbec2.bioconductor.org/BBS/3.11/bioc/src/contrib/scone_1.12.0.tar.gz && rm -rf scone.buildbin-libdir && mkdir scone.buildbin-libdir && C:\Users\biocbuild\bbs-3.11-bioc\R\bin\R.exe CMD INSTALL --merge-multiarch --build --library=scone.buildbin-libdir scone_1.12.0.tar.gz && C:\Users\biocbuild\bbs-3.11-bioc\R\bin\R.exe CMD INSTALL scone_1.12.0.zip && rm scone_1.12.0.tar.gz scone_1.12.0.zip
StartedAt: 2020-10-16 19:27:14 -0400 (Fri, 16 Oct 2020)
EndedAt: 2020-10-16 19:29:13 -0400 (Fri, 16 Oct 2020)
EllapsedTime: 118.9 seconds
RetCode: 0
Status:  OK  

Command output

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###
### Running command:
###
###   C:\cygwin\bin\curl.exe -O https://malbec2.bioconductor.org/BBS/3.11/bioc/src/contrib/scone_1.12.0.tar.gz && rm -rf scone.buildbin-libdir && mkdir scone.buildbin-libdir && C:\Users\biocbuild\bbs-3.11-bioc\R\bin\R.exe CMD INSTALL --merge-multiarch --build --library=scone.buildbin-libdir scone_1.12.0.tar.gz && C:\Users\biocbuild\bbs-3.11-bioc\R\bin\R.exe CMD INSTALL scone_1.12.0.zip && rm scone_1.12.0.tar.gz scone_1.12.0.zip
###
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  % Total    % Received % Xferd  Average Speed   Time    Time     Time  Current
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100  107k  100  107k    0     0  1775k      0 --:--:-- --:--:-- --:--:-- 1957k

install for i386

* installing *source* package 'scone' ...
** using staged installation
** R
** data
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
  converting help for package 'scone'
    finding HTML links ... done
    CLR_FN                                  html  
    DESEQ_FN                                html  
    FQ_FN                                   html  
    SCRAN_FN                                html  
    SUM_FN                                  html  
    SconeExperiment-class                   html  
    finding level-2 HTML links ... done

    TMM_FN                                  html  
    UQ_FN                                   html  
    biplot_color                            html  
    biplot_interactive                      html  
    control_genes                           html  
Rd warning: C:/Users/biocbuild/bbs-3.11-bioc/tmpdir/RtmpmYmtMn/R.INSTALL2ec04f8b52ec/scone/man/control_genes.Rd:28: file link 'toupper' in package 'base' does not exist and so has been treated as a topic
Rd warning: C:/Users/biocbuild/bbs-3.11-bioc/tmpdir/RtmpmYmtMn/R.INSTALL2ec04f8b52ec/scone/man/control_genes.Rd:29: file link 'tolower' in package 'base' does not exist and so has been treated as a topic
    estimate_ziber                          html  
    factor_sample_filter                    html  
    fast_estimate_ziber                     html  
    get_bio                                 html  
    get_design                              html  
    get_negconruv                           html  
    get_normalized                          html  
    get_params                              html  
    get_qc                                  html  
    get_scores                              html  
    impute_expectation                      html  
    impute_null                             html  
    lm_adjust                               html  
    make_design                             html  
    metric_sample_filter                    html  
    scone                                   html  
Rd warning: C:/Users/biocbuild/bbs-3.11-bioc/tmpdir/RtmpmYmtMn/R.INSTALL2ec04f8b52ec/scone/man/scone.Rd:101: file link 'bpparam' in package 'BiocParallel' does not exist and so has been treated as a topic
    sconeReport                             html  
    scone_easybake                          html  
    score_matrix                            html  
    select_methods                          html  
    simple_FNR_params                       html  
** building package indices
** installing vignettes
** testing if installed package can be loaded from temporary location
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path

install for x64

* installing *source* package 'scone' ...
** testing if installed package can be loaded
* MD5 sums
packaged installation of 'scone' as scone_1.12.0.zip
* DONE (scone)
* installing to library 'C:/Users/biocbuild/bbs-3.11-bioc/R/library'
package 'scone' successfully unpacked and MD5 sums checked