Back to Multiple platform build/check report for BioC 3.11
ABCDEFGHIJKLMNOPQ[R]STUVWXYZ

INSTALL report for rgsepd on tokay2

This page was generated on 2020-10-17 11:57:37 -0400 (Sat, 17 Oct 2020).

TO THE DEVELOPERS/MAINTAINERS OF THE rgsepd PACKAGE: Please make sure to use the following settings in order to reproduce any error or warning you see on this page.
Package 1480/1905HostnameOS / ArchINSTALLBUILDCHECKBUILD BIN
rgsepd 1.20.2
Karl Stamm
Snapshot Date: 2020-10-16 14:40:19 -0400 (Fri, 16 Oct 2020)
URL: https://git.bioconductor.org/packages/rgsepd
Branch: RELEASE_3_11
Last Commit: ee961a0
Last Changed Date: 2020-06-04 10:25:45 -0400 (Thu, 04 Jun 2020)
malbec2 Linux (Ubuntu 18.04.4 LTS) / x86_64  OK  OK  OK UNNEEDED, same version exists in internal repository
tokay2 Windows Server 2012 R2 Standard / x64 [ OK ] OK  OK  OK UNNEEDED, same version exists in internal repository
machv2 macOS 10.14.6 Mojave / x86_64  OK  OK  OK  OK UNNEEDED, same version exists in internal repository

Summary

Package: rgsepd
Version: 1.20.2
Command: C:\cygwin\bin\curl.exe -O https://malbec2.bioconductor.org/BBS/3.11/bioc/src/contrib/rgsepd_1.20.2.tar.gz && rm -rf rgsepd.buildbin-libdir && mkdir rgsepd.buildbin-libdir && C:\Users\biocbuild\bbs-3.11-bioc\R\bin\R.exe CMD INSTALL --merge-multiarch --build --library=rgsepd.buildbin-libdir rgsepd_1.20.2.tar.gz && C:\Users\biocbuild\bbs-3.11-bioc\R\bin\R.exe CMD INSTALL rgsepd_1.20.2.zip && rm rgsepd_1.20.2.tar.gz rgsepd_1.20.2.zip
StartedAt: 2020-10-16 19:29:57 -0400 (Fri, 16 Oct 2020)
EndedAt: 2020-10-16 19:32:38 -0400 (Fri, 16 Oct 2020)
EllapsedTime: 160.6 seconds
RetCode: 0
Status:  OK  

Command output

##############################################################################
##############################################################################
###
### Running command:
###
###   C:\cygwin\bin\curl.exe -O https://malbec2.bioconductor.org/BBS/3.11/bioc/src/contrib/rgsepd_1.20.2.tar.gz && rm -rf rgsepd.buildbin-libdir && mkdir rgsepd.buildbin-libdir && C:\Users\biocbuild\bbs-3.11-bioc\R\bin\R.exe CMD INSTALL --merge-multiarch --build --library=rgsepd.buildbin-libdir rgsepd_1.20.2.tar.gz && C:\Users\biocbuild\bbs-3.11-bioc\R\bin\R.exe CMD INSTALL rgsepd_1.20.2.zip && rm rgsepd_1.20.2.tar.gz rgsepd_1.20.2.zip
###
##############################################################################
##############################################################################


  % Total    % Received % Xferd  Average Speed   Time    Time     Time  Current
                                 Dload  Upload   Total   Spent    Left  Speed

  0     0    0     0    0     0      0      0 --:--:-- --:--:-- --:--:--     0
100  960k  100  960k    0     0  6256k      0 --:--:-- --:--:-- --:--:-- 6535k

install for i386

* installing *source* package 'rgsepd' ...
** using staged installation
** R
** data
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
  converting help for package 'rgsepd'
    finding HTML links ... done
    DisplayName                             html  
    ExtractProjection                       html  
    GSEPD_ChangeConditions                  html  
    GSEPD_ChangeOutput                      html  
    GSEPD_DEGHeatmap                        html  
    GSEPD_Export_DESeq                      html  
    GSEPD_Heatmap                           html  
    GSEPD_INIT                              html  
    GSEPD_PCA_Plot                          html  
    GSEPD_PCA_Spec                          html  
    GSEPD_Process                           html  
    GSEPD_ProcessAll                        html  
    GSEPD_PullDEG                           html  
    IlluminaBodymap                         html  
    IlluminaBodymapMeta                     html  
    Name_to_RefSeq                          html  
    rgsepd-package                          html  
** building package indices
** installing vignettes
** testing if installed package can be loaded from temporary location
'select()' returned 1:1 mapping between keys and columns
'select()' returned 1:1 mapping between keys and columns
** testing if installed package can be loaded from final location
'select()' returned 1:1 mapping between keys and columns
'select()' returned 1:1 mapping between keys and columns
** testing if installed package keeps a record of temporary installation path

install for x64

* installing *source* package 'rgsepd' ...
** testing if installed package can be loaded
'select()' returned 1:1 mapping between keys and columns
'select()' returned 1:1 mapping between keys and columns
* MD5 sums
packaged installation of 'rgsepd' as rgsepd_1.20.2.zip
* DONE (rgsepd)
* installing to library 'C:/Users/biocbuild/bbs-3.11-bioc/R/library'
package 'rgsepd' successfully unpacked and MD5 sums checked