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BUILD report for rfPred on tokay2

This page was generated on 2020-10-17 11:57:36 -0400 (Sat, 17 Oct 2020).

TO THE DEVELOPERS/MAINTAINERS OF THE rfPred PACKAGE: Please make sure to use the following settings in order to reproduce any error or warning you see on this page.
Package 1471/1905HostnameOS / ArchINSTALLBUILDCHECKBUILD BIN
rfPred 1.26.0
Hugo Varet
Snapshot Date: 2020-10-16 14:40:19 -0400 (Fri, 16 Oct 2020)
URL: https://git.bioconductor.org/packages/rfPred
Branch: RELEASE_3_11
Last Commit: 8a69a8f
Last Changed Date: 2020-04-27 14:35:44 -0400 (Mon, 27 Apr 2020)
malbec2 Linux (Ubuntu 18.04.4 LTS) / x86_64  OK  OK  OK UNNEEDED, same version exists in internal repository
tokay2 Windows Server 2012 R2 Standard / x64  OK [ ERROR ] skipped  skipped 
machv2 macOS 10.14.6 Mojave / x86_64  OK  OK  OK  OK UNNEEDED, same version exists in internal repository

Summary

Package: rfPred
Version: 1.26.0
Command: chmod a+r rfPred -R && C:\Users\biocbuild\bbs-3.11-bioc\R\bin\R.exe CMD build --keep-empty-dirs --no-resave-data rfPred
StartedAt: 2020-10-17 00:10:33 -0400 (Sat, 17 Oct 2020)
EndedAt: 2020-10-17 00:10:57 -0400 (Sat, 17 Oct 2020)
EllapsedTime: 23.5 seconds
RetCode: 1
Status:  ERROR  
PackageFile: None
PackageFileSize: NA

Command output

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### Running command:
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###   chmod a+r rfPred -R && C:\Users\biocbuild\bbs-3.11-bioc\R\bin\R.exe CMD build --keep-empty-dirs --no-resave-data rfPred
###
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* checking for file 'rfPred/DESCRIPTION' ... OK
* preparing 'rfPred':
* checking DESCRIPTION meta-information ... OK
* cleaning src
* installing the package to build vignettes
* creating vignettes ... ERROR
--- re-building 'vignette.Rnw' using Sweave
Loading required package: Rsamtools
Loading required package: GenomeInfoDb
Loading required package: BiocGenerics
Loading required package: parallel

Attaching package: 'BiocGenerics'

The following objects are masked from 'package:parallel':

    clusterApply, clusterApplyLB, clusterCall, clusterEvalQ,
    clusterExport, clusterMap, parApply, parCapply, parLapply,
    parLapplyLB, parRapply, parSapply, parSapplyLB

The following objects are masked from 'package:stats':

    IQR, mad, sd, var, xtabs

The following objects are masked from 'package:base':

    Filter, Find, Map, Position, Reduce, anyDuplicated, append,
    as.data.frame, basename, cbind, colnames, dirname, do.call,
    duplicated, eval, evalq, get, grep, grepl, intersect, is.unsorted,
    lapply, mapply, match, mget, order, paste, pmax, pmax.int, pmin,
    pmin.int, rank, rbind, rownames, sapply, setdiff, sort, table,
    tapply, union, unique, unsplit, which, which.max, which.min

Loading required package: S4Vectors
Loading required package: stats4

Attaching package: 'S4Vectors'

The following object is masked from 'package:base':

    expand.grid

Loading required package: IRanges

Attaching package: 'IRanges'

The following object is masked from 'package:grDevices':

    windows

Loading required package: GenomicRanges
Loading required package: Biostrings
Loading required package: XVector

Attaching package: 'Biostrings'

The following object is masked from 'package:base':

    strsplit

Loading required package: data.table

Attaching package: 'data.table'

The following object is masked from 'package:GenomicRanges':

    shift

The following object is masked from 'package:IRanges':

    shift

The following objects are masked from 'package:S4Vectors':

    first, second


[E::hts_open_format] Failed to open file http://www.sbim.fr/rfPred/all_chr_rfPred.txtz
Error: processing vignette 'vignette.Rnw' failed with diagnostics:
 chunk 4 
Error : scanTabix: failed to open file: http://www.sbim.fr/rfPred/all_chr_rfPred.txtz
 path: http://www.sbim.fr/rfPred/all_chr_rfPred.txtz
 index: http://www.sbim.fr/rfPred/all_chr_rfPred.txtz.tbi

--- failed re-building 'vignette.Rnw'

SUMMARY: processing the following file failed:
  'vignette.Rnw'

Error: Vignette re-building failed.
Execution halted