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INSTALL report for ramwas on tokay2

This page was generated on 2020-10-17 11:57:32 -0400 (Sat, 17 Oct 2020).

TO THE DEVELOPERS/MAINTAINERS OF THE ramwas PACKAGE: Please make sure to use the following settings in order to reproduce any error or warning you see on this page.
Package 1413/1905HostnameOS / ArchINSTALLBUILDCHECKBUILD BIN
ramwas 1.12.0
Andrey A Shabalin
Snapshot Date: 2020-10-16 14:40:19 -0400 (Fri, 16 Oct 2020)
URL: https://git.bioconductor.org/packages/ramwas
Branch: RELEASE_3_11
Last Commit: c076b03
Last Changed Date: 2020-04-27 15:04:10 -0400 (Mon, 27 Apr 2020)
malbec2 Linux (Ubuntu 18.04.4 LTS) / x86_64  OK  OK  OK UNNEEDED, same version exists in internal repository
tokay2 Windows Server 2012 R2 Standard / x64 [ OK ] OK  WARNINGS  OK UNNEEDED, same version exists in internal repository
machv2 macOS 10.14.6 Mojave / x86_64  OK  OK  OK  OK UNNEEDED, same version exists in internal repository

Summary

Package: ramwas
Version: 1.12.0
Command: C:\cygwin\bin\curl.exe -O https://malbec2.bioconductor.org/BBS/3.11/bioc/src/contrib/ramwas_1.12.0.tar.gz && rm -rf ramwas.buildbin-libdir && mkdir ramwas.buildbin-libdir && C:\Users\biocbuild\bbs-3.11-bioc\R\bin\R.exe CMD INSTALL --merge-multiarch --build --library=ramwas.buildbin-libdir ramwas_1.12.0.tar.gz && C:\Users\biocbuild\bbs-3.11-bioc\R\bin\R.exe CMD INSTALL ramwas_1.12.0.zip && rm ramwas_1.12.0.tar.gz ramwas_1.12.0.zip
StartedAt: 2020-10-16 18:52:56 -0400 (Fri, 16 Oct 2020)
EndedAt: 2020-10-16 18:54:24 -0400 (Fri, 16 Oct 2020)
EllapsedTime: 88.4 seconds
RetCode: 0
Status:  OK  

Command output

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###
### Running command:
###
###   C:\cygwin\bin\curl.exe -O https://malbec2.bioconductor.org/BBS/3.11/bioc/src/contrib/ramwas_1.12.0.tar.gz && rm -rf ramwas.buildbin-libdir && mkdir ramwas.buildbin-libdir && C:\Users\biocbuild\bbs-3.11-bioc\R\bin\R.exe CMD INSTALL --merge-multiarch --build --library=ramwas.buildbin-libdir ramwas_1.12.0.tar.gz && C:\Users\biocbuild\bbs-3.11-bioc\R\bin\R.exe CMD INSTALL ramwas_1.12.0.zip && rm ramwas_1.12.0.tar.gz ramwas_1.12.0.zip
###
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  % Total    % Received % Xferd  Average Speed   Time    Time     Time  Current
                                 Dload  Upload   Total   Spent    Left  Speed

  0     0    0     0    0     0      0      0 --:--:-- --:--:-- --:--:--     0
100  210k  100  210k    0     0  2960k      0 --:--:-- --:--:-- --:--:-- 3238k

install for i386

* installing *source* package 'ramwas' ...
** using staged installation
** libs
"C:/rtools40/mingw32/bin/"gcc  -I"C:/Users/BIOCBU~1/BBS-3~1.11-/R/include" -DNDEBUG     -I"C:/extsoft/include"     -O2 -Wall  -std=gnu99 -mfpmath=sse -msse2 -mstackrealign -c rw_c_code.c -o rw_c_code.o
C:/rtools40/mingw32/bin/gcc -shared -s -static-libgcc -o ramwas.dll tmp.def rw_c_code.o -LC:/extsoft/lib/i386 -LC:/extsoft/lib -LC:/Users/BIOCBU~1/BBS-3~1.11-/R/bin/i386 -lR
installing to C:/Users/biocbuild/bbs-3.11-bioc/meat/ramwas.buildbin-libdir/00LOCK-ramwas/00new/ramwas/libs/i386
** R
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
  converting help for package 'ramwas'
    finding HTML links ... done
    MakeBED                                 html  
    QCs                                     html  
Rd warning: C:/Users/biocbuild/bbs-3.11-bioc/tmpdir/RtmpMd6Lgr/R.INSTALL23204f0a7f13/ramwas/man/QCs.Rd:71: file link 'plot' in package 'graphics' does not exist and so has been treated as a topic
    RaMWAS                                  html  
    cachedRDSload                           html  
    findBestNpvs                            html  
    get                                     html  
    getCpGset                               html  
    injectSNPsMAF                           html  
    finding level-2 HTML links ... done

    insilicoFASTQ                           html  
    isAbsolutePath                          html  
    makefullpath                            html  
    manhattan                               html  
    mat2cols                                html  
    orthonormalizeCovariates                html  
    parameterDump                           html  
    parameterPreprocess                     html  
    parametersFromFile                      html  
    pipeline                                html  
    plotCV                                  html  
    plotFragmentSizeDistributionEstimate    html  
    plotPC                                  html  
    processCommandLine                      html  
    pvalue2qvalue                           html  
    qqplotFast                              html  
Rd warning: C:/Users/biocbuild/bbs-3.11-bioc/tmpdir/RtmpMd6Lgr/R.INSTALL23204f0a7f13/ramwas/man/qqplotFast.Rd:91: file link 'plot' in package 'graphics' does not exist and so has been treated as a topic
    ramwas0createArtificialData             html  
    ramwasAnnotateLocations                 html  
    ramwasParameters                        html  
    rowcolSumSq                             html  
    rwDataClass-class                       html  
    subsetData                              html  
    testPhenotype                           html  
*** copying figures
** building package indices
** installing vignettes
** testing if installed package can be loaded from temporary location
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path

install for x64

* installing *source* package 'ramwas' ...
** libs
"C:/rtools40/mingw64/bin/"gcc  -I"C:/Users/BIOCBU~1/BBS-3~1.11-/R/include" -DNDEBUG     -I"C:/extsoft/include"     -O2 -Wall  -std=gnu99 -mfpmath=sse -msse2 -mstackrealign -c rw_c_code.c -o rw_c_code.o
C:/rtools40/mingw64/bin/gcc -shared -s -static-libgcc -o ramwas.dll tmp.def rw_c_code.o -LC:/extsoft/lib/x64 -LC:/extsoft/lib -LC:/Users/BIOCBU~1/BBS-3~1.11-/R/bin/x64 -lR
installing to C:/Users/biocbuild/bbs-3.11-bioc/meat/ramwas.buildbin-libdir/ramwas/libs/x64
** testing if installed package can be loaded
* MD5 sums
packaged installation of 'ramwas' as ramwas_1.12.0.zip
* DONE (ramwas)
* installing to library 'C:/Users/biocbuild/bbs-3.11-bioc/R/library'
package 'ramwas' successfully unpacked and MD5 sums checked