Back to Multiple platform build/check report for BioC 3.11
ABCDEFGHIJKLMNO[P]QRSTUVWXYZ

INSTALL report for pmp on tokay2

This page was generated on 2020-10-17 11:57:25 -0400 (Sat, 17 Oct 2020).

TO THE DEVELOPERS/MAINTAINERS OF THE pmp PACKAGE: Please make sure to use the following settings in order to reproduce any error or warning you see on this page.
Package 1329/1905HostnameOS / ArchINSTALLBUILDCHECKBUILD BIN
pmp 1.0.0
Andris Jankevics
Snapshot Date: 2020-10-16 14:40:19 -0400 (Fri, 16 Oct 2020)
URL: https://git.bioconductor.org/packages/pmp
Branch: RELEASE_3_11
Last Commit: 0945cf1
Last Changed Date: 2020-04-27 15:33:24 -0400 (Mon, 27 Apr 2020)
malbec2 Linux (Ubuntu 18.04.4 LTS) / x86_64  OK  OK  OK UNNEEDED, same version exists in internal repository
tokay2 Windows Server 2012 R2 Standard / x64 [ OK ] OK  OK  OK UNNEEDED, same version exists in internal repository
machv2 macOS 10.14.6 Mojave / x86_64  OK  OK  OK  OK UNNEEDED, same version exists in internal repository

Summary

Package: pmp
Version: 1.0.0
Command: C:\cygwin\bin\curl.exe -O https://malbec2.bioconductor.org/BBS/3.11/bioc/src/contrib/pmp_1.0.0.tar.gz && rm -rf pmp.buildbin-libdir && mkdir pmp.buildbin-libdir && C:\Users\biocbuild\bbs-3.11-bioc\R\bin\R.exe CMD INSTALL --merge-multiarch --build --library=pmp.buildbin-libdir pmp_1.0.0.tar.gz && C:\Users\biocbuild\bbs-3.11-bioc\R\bin\R.exe CMD INSTALL pmp_1.0.0.zip && rm pmp_1.0.0.tar.gz pmp_1.0.0.zip
StartedAt: 2020-10-16 17:55:23 -0400 (Fri, 16 Oct 2020)
EndedAt: 2020-10-16 17:56:10 -0400 (Fri, 16 Oct 2020)
EllapsedTime: 46.7 seconds
RetCode: 0
Status:  OK  

Command output

##############################################################################
##############################################################################
###
### Running command:
###
###   C:\cygwin\bin\curl.exe -O https://malbec2.bioconductor.org/BBS/3.11/bioc/src/contrib/pmp_1.0.0.tar.gz && rm -rf pmp.buildbin-libdir && mkdir pmp.buildbin-libdir && C:\Users\biocbuild\bbs-3.11-bioc\R\bin\R.exe CMD INSTALL --merge-multiarch --build --library=pmp.buildbin-libdir pmp_1.0.0.tar.gz && C:\Users\biocbuild\bbs-3.11-bioc\R\bin\R.exe CMD INSTALL pmp_1.0.0.zip && rm pmp_1.0.0.tar.gz pmp_1.0.0.zip
###
##############################################################################
##############################################################################


  % Total    % Received % Xferd  Average Speed   Time    Time     Time  Current
                                 Dload  Upload   Total   Spent    Left  Speed

  0     0    0     0    0     0      0      0 --:--:-- --:--:-- --:--:--     0
100 1708k  100 1708k    0     0  5800k      0 --:--:-- --:--:-- --:--:-- 5951k

install for i386

* installing *source* package 'pmp' ...
** using staged installation
** R
** data
*** moving datasets to lazyload DB
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
  converting help for package 'pmp'
    finding HTML links ... done
    MTBLS79                                 html  
    QCRSC                                   html  
    filter_peaks_by_blank                   html  
    filter_peaks_by_fraction                html  
    filter_peaks_by_rsd                     html  
    filter_samples_by_mv                    html  
    glog_plot_optimised_lambda              html  
    glog_transformation                     html  
    mv_imputation                           html  
    normalise_to_sum                        html  
    pqn_normalisation                       html  
    processing_history                      html  
    remove_peaks                            html  
    sbc_plot                                html  
** building package indices
** installing vignettes
** testing if installed package can be loaded from temporary location
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path

install for x64

* installing *source* package 'pmp' ...
** testing if installed package can be loaded
* MD5 sums
packaged installation of 'pmp' as pmp_1.0.0.zip
* DONE (pmp)
* installing to library 'C:/Users/biocbuild/bbs-3.11-bioc/R/library'
package 'pmp' successfully unpacked and MD5 sums checked