Back to Multiple platform build/check report for BioC 3.11
ABCDEFGHIJKL[M]NOPQRSTUVWXYZ

BUILD report for msa on tokay2

This page was generated on 2020-10-17 11:57:12 -0400 (Sat, 17 Oct 2020).

TO THE DEVELOPERS/MAINTAINERS OF THE msa PACKAGE: Please make sure to use the following settings in order to reproduce any error or warning you see on this page.
Package 1134/1905HostnameOS / ArchINSTALLBUILDCHECKBUILD BIN
msa 1.20.1
Ulrich Bodenhofer
Snapshot Date: 2020-10-16 14:40:19 -0400 (Fri, 16 Oct 2020)
URL: https://git.bioconductor.org/packages/msa
Branch: RELEASE_3_11
Last Commit: 4a8d148
Last Changed Date: 2020-09-01 04:26:45 -0400 (Tue, 01 Sep 2020)
malbec2 Linux (Ubuntu 18.04.4 LTS) / x86_64  OK  OK  WARNINGS UNNEEDED, same version exists in internal repository
tokay2 Windows Server 2012 R2 Standard / x64  OK [ OK ] WARNINGS  OK UNNEEDED, same version exists in internal repository
machv2 macOS 10.14.6 Mojave / x86_64  OK  OK  WARNINGS  OK UNNEEDED, same version exists in internal repository

Summary

Package: msa
Version: 1.20.1
Command: chmod a+r msa -R && C:\Users\biocbuild\bbs-3.11-bioc\R\bin\R.exe CMD build --keep-empty-dirs --no-resave-data msa
StartedAt: 2020-10-16 22:59:06 -0400 (Fri, 16 Oct 2020)
EndedAt: 2020-10-16 23:11:49 -0400 (Fri, 16 Oct 2020)
EllapsedTime: 763.5 seconds
RetCode: 0
Status:  OK  
PackageFile: msa_1.20.1.tar.gz
PackageFileSize: 3.594 MiB

Command output

##############################################################################
##############################################################################
###
### Running command:
###
###   chmod a+r msa -R && C:\Users\biocbuild\bbs-3.11-bioc\R\bin\R.exe CMD build --keep-empty-dirs --no-resave-data msa
###
##############################################################################
##############################################################################


* checking for file 'msa/DESCRIPTION' ... OK
* preparing 'msa':
* checking DESCRIPTION meta-information ... OK
* cleaning src
* running 'cleanup.win'
* installing the package to build vignettes
* creating vignettes ... OK
* cleaning src
* running 'cleanup.win'
* checking for LF line-endings in source and make files and shell scripts
* checking for empty or unneeded directories
* building 'msa_1.20.1.tar.gz'
Warning: file 'msa/cleanup' did not have execute permissions: corrected
Warning: file 'msa/src/ClustalOmega/configure' did not have execute permissions: corrected
Warning: file 'msa/src/ClustalW/configure' did not have execute permissions: corrected
Warning: file 'msa/src/gc-7.2/configure' did not have execute permissions: corrected
Warning: file 'msa/src/gc-7.2/libatomic_ops/configure' did not have execute permissions: corrected