| Back to Multiple platform build/check report for BioC 3.11 |
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This page was generated on 2020-10-17 11:57:05 -0400 (Sat, 17 Oct 2020).
| TO THE DEVELOPERS/MAINTAINERS OF THE methyvim PACKAGE: Please make sure to use the following settings in order to reproduce any error or warning you see on this page. |
| Package 1067/1905 | Hostname | OS / Arch | INSTALL | BUILD | CHECK | BUILD BIN | ||||||
| methyvim 1.10.0 Nima Hejazi
| malbec2 | Linux (Ubuntu 18.04.4 LTS) / x86_64 | OK | ERROR | skipped | |||||||
| tokay2 | Windows Server 2012 R2 Standard / x64 | [ OK ] | ERROR | skipped | skipped | |||||||
| machv2 | macOS 10.14.6 Mojave / x86_64 | OK | ERROR | skipped | skipped |
| Package: methyvim |
| Version: 1.10.0 |
| Command: C:\cygwin\bin\curl.exe -O https://malbec2.bioconductor.org/BBS/3.11/bioc/src/contrib/methyvim_1.10.0.tar.gz && rm -rf methyvim.buildbin-libdir && mkdir methyvim.buildbin-libdir && C:\Users\biocbuild\bbs-3.11-bioc\R\bin\R.exe CMD INSTALL --merge-multiarch --build --library=methyvim.buildbin-libdir methyvim_1.10.0.tar.gz && C:\Users\biocbuild\bbs-3.11-bioc\R\bin\R.exe CMD INSTALL methyvim_1.10.0.zip && rm methyvim_1.10.0.tar.gz methyvim_1.10.0.zip |
| StartedAt: 2020-10-16 19:10:51 -0400 (Fri, 16 Oct 2020) |
| EndedAt: 2020-10-16 19:12:18 -0400 (Fri, 16 Oct 2020) |
| EllapsedTime: 87.6 seconds |
| RetCode: 0 |
| Status: OK |
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### Running command:
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### C:\cygwin\bin\curl.exe -O https://malbec2.bioconductor.org/BBS/3.11/bioc/src/contrib/methyvim_1.10.0.tar.gz && rm -rf methyvim.buildbin-libdir && mkdir methyvim.buildbin-libdir && C:\Users\biocbuild\bbs-3.11-bioc\R\bin\R.exe CMD INSTALL --merge-multiarch --build --library=methyvim.buildbin-libdir methyvim_1.10.0.tar.gz && C:\Users\biocbuild\bbs-3.11-bioc\R\bin\R.exe CMD INSTALL methyvim_1.10.0.zip && rm methyvim_1.10.0.tar.gz methyvim_1.10.0.zip
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install for i386
* installing *source* package 'methyvim' ...
** using staged installation
** R
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
converting help for package 'methyvim'
finding HTML links ... done
cluster_sites html
fdr_msa html
force_positivity html
limma_screen html
methyheat html
methytmle-class html
methyvim html
Rd warning: C:/Users/biocbuild/bbs-3.11-bioc/tmpdir/Rtmpszwp1f/R.INSTALL20b06564218f/methyvim/man/methyvim.Rd:31: file link 'GenomicRatioSet' in package 'minfi' does not exist and so has been treated as a topic
Rd warning: C:/Users/biocbuild/bbs-3.11-bioc/tmpdir/Rtmpszwp1f/R.INSTALL20b06564218f/methyvim/man/methyvim.Rd:53: file link 'getBeta' in package 'minfi' does not exist and so has been treated as a topic
Rd warning: C:/Users/biocbuild/bbs-3.11-bioc/tmpdir/Rtmpszwp1f/R.INSTALL20b06564218f/methyvim/man/methyvim.Rd:54: file link 'getM' in package 'minfi' does not exist and so has been treated as a topic
methyvim_tmle html
Rd warning: C:/Users/biocbuild/bbs-3.11-bioc/tmpdir/Rtmpszwp1f/R.INSTALL20b06564218f/methyvim/man/methyvim_tmle.Rd:34: file link 'getBeta' in package 'minfi' does not exist and so has been treated as a topic
Rd warning: C:/Users/biocbuild/bbs-3.11-bioc/tmpdir/Rtmpszwp1f/R.INSTALL20b06564218f/methyvim/man/methyvim_tmle.Rd:35: file link 'getM' in package 'minfi' does not exist and so has been treated as a topic
methyvolc html
plot.methytmle html
set_parallel html
wrap_in_try html
** building package indices
** installing vignettes
** testing if installed package can be loaded from temporary location
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path
install for x64
* installing *source* package 'methyvim' ...
** testing if installed package can be loaded
* MD5 sums
packaged installation of 'methyvim' as methyvim_1.10.0.zip
* DONE (methyvim)
* installing to library 'C:/Users/biocbuild/bbs-3.11-bioc/R/library'
package 'methyvim' successfully unpacked and MD5 sums checked