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BUILD BIN report for metaseqR on tokay2

This page was generated on 2020-10-17 11:57:03 -0400 (Sat, 17 Oct 2020).

TO THE DEVELOPERS/MAINTAINERS OF THE metaseqR PACKAGE: Please make sure to use the following settings in order to reproduce any error or warning you see on this page.
Package 1043/1905HostnameOS / ArchINSTALLBUILDCHECKBUILD BIN
metaseqR 1.28.0
Panagiotis Moulos
Snapshot Date: 2020-10-16 14:40:19 -0400 (Fri, 16 Oct 2020)
URL: https://git.bioconductor.org/packages/metaseqR
Branch: RELEASE_3_11
Last Commit: eb00bcf
Last Changed Date: 2020-04-27 14:39:03 -0400 (Mon, 27 Apr 2020)
malbec2 Linux (Ubuntu 18.04.4 LTS) / x86_64  OK  OK  WARNINGS UNNEEDED, same version exists in internal repository
tokay2 Windows Server 2012 R2 Standard / x64  OK  OK  WARNINGS [ OK ]UNNEEDED, same version exists in internal repository
machv2 macOS 10.14.6 Mojave / x86_64  OK  OK  WARNINGS  OK UNNEEDED, same version exists in internal repository

Summary

Package: metaseqR
Version: 1.28.0
Command: rm -rf metaseqR.buildbin-libdir && mkdir metaseqR.buildbin-libdir && C:\Users\biocbuild\bbs-3.11-bioc\R\bin\R.exe CMD INSTALL --merge-multiarch --build --library=metaseqR.buildbin-libdir metaseqR_1.28.0.tar.gz
StartedAt: 2020-10-17 10:59:21 -0400 (Sat, 17 Oct 2020)
EndedAt: 2020-10-17 11:00:53 -0400 (Sat, 17 Oct 2020)
EllapsedTime: 92.7 seconds
RetCode: 0
Status:  OK  
PackageFile: metaseqR_1.28.0.zip
PackageFileSize: 2.892 MiB

Command output

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###
### Running command:
###
###   rm -rf metaseqR.buildbin-libdir && mkdir metaseqR.buildbin-libdir && C:\Users\biocbuild\bbs-3.11-bioc\R\bin\R.exe CMD INSTALL --merge-multiarch --build --library=metaseqR.buildbin-libdir metaseqR_1.28.0.tar.gz
###
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install for i386

* installing *source* package 'metaseqR' ...
** using staged installation
** R
** data
*** moving datasets to lazyload DB
** inst
** byte-compile and prepare package for lazy loading
Warning message:
Package 'DESeq' is deprecated and will be removed from Bioconductor
  version 3.13. Please use DESeq2 
** help
*** installing help indices
  converting help for package 'metaseqR'
    finding HTML links ... done
    as.class.vector                         html  
    build.export                            html  
    calc.f1score                            html  
    calc.otr                                html  
    cddat                                   html  
    cdplot                                  html  
    check.contrast.format                   html  
    check.file.args                         html  
    check.graphics.file                     html  
    check.graphics.type                     html  
    check.libsize                           html  
    check.main.args                         html  
    check.num.args                          html  
    check.packages                          html  
    check.parallel                          html  
    check.text.args                         html  
    combine.bonferroni                      html  
    combine.maxp                            html  
    combine.minp                            html  
    combine.simes                           html  
    combine.weight                          html  
    construct.gene.model                    html  
    construct.utr.model                     html  
    diagplot.avg.ftd                        html  
    diagplot.boxplot                        html  
    diagplot.cor                            html  
    diagplot.de.heatmap                     html  
    diagplot.edaseq                         html  
    diagplot.filtered                       html  
    diagplot.ftd                            html  
    diagplot.mds                            html  
    diagplot.metaseqr                       html  
    diagplot.noiseq                         html  
    diagplot.noiseq.saturation              html  
    diagplot.pairs                          html  
    diagplot.roc                            html  
    diagplot.venn                           html  
    diagplot.volcano                        html  
    disp                                    html  
    downsample.counts                       html  
    estimate.aufc.weights                   html  
    estimate.sim.params                     html  
    filter.exons                            html  
    filter.genes                            html  
    filter.high                             html  
    filter.low                              html  
    fisher.method                           html  
    fisher.method.perm                      html  
    fisher.sum                              html  
    get.annotation                          html  
    get.arg                                 html  
    get.biotypes                            html  
    get.bs.organism                         html  
    get.dataset                             html  
    get.defaults                            html  
    get.ensembl.annotation                  html  
    get.exon.attributes                     html  
    get.gc.content                          html  
    get.gene.attributes                     html  
    get.host                                html  
    get.preset.opts                         html  
    get.strict.biofilter                    html  
    get.transcript.utr.attributes           html  
    get.ucsc.annotation                     html  
    get.ucsc.credentials                    html  
    get.ucsc.dbl                            html  
    get.ucsc.organism                       html  
    get.ucsc.query                          html  
    get.ucsc.tabledef                       html  
    get.ucsc.tbl.tpl                        html  
    get.valid.chrs                          html  
    get.weights                             html  
    graphics.close                          html  
    graphics.open                           html  
    hg19.exon.counts                        html  
    libsize.list.hg19                       html  
    libsize.list.mm9                        html  
    load.bs.genome                          html  
    log2disp                                html  
    make.avg.expression                     html  
    make.contrast.list                      html  
    make.export.list                        html  
    make.fold.change                        html  
    make.grid                               html  
    make.highcharts.points                  html  
    make.html.body                          html  
    make.html.cells                         html  
    make.html.header                        html  
    make.html.rows                          html  
    make.html.table                         html  
    make.matrix                             html  
    make.path.struct                        html  
    make.permutation                        html  
    make.project.path                       html  
    make.report.messages                    html  
    make.sample.list                        html  
    make.sim.data.sd                        html  
    make.sim.data.tcc                       html  
    make.stat                               html  
    make.transformation                     html  
    make.venn.areas                         html  
    make.venn.colorscheme                   html  
    make.venn.counts                        html  
    make.venn.pairs                         html  
    meta.perm                               html  
    meta.test                               html  
    meta.worker                             html  
    metaseqR-package                        html  
    metaseqr                                html  
    mlfo                                    html  
    mm9.gene.counts                         html  
    nat2log                                 html  
    normalize.deseq                         html  
    normalize.edaseq                        html  
    normalize.edger                         html  
    normalize.nbpseq                        html  
    normalize.noiseq                        html  
    read.targets                            html  
    read2count                              html  
    reduce.exons                            html  
    reduce.gene.data                        html  
    sample.list.hg19                        html  
    sample.list.mm9                         html  
    set.arg                                 html  
    stat.bayseq                             html  
    stat.deseq                              html  
    stat.edger                              html  
    stat.limma                              html  
    stat.nbpseq                             html  
    stat.noiseq                             html  
    validate.alg.args                       html  
    validate.list.args                      html  
    wapply                                  html  
    wp.adjust                               html  
** building package indices
** installing vignettes
** testing if installed package can be loaded from temporary location
Warning: Package 'DESeq' is deprecated and will be removed from Bioconductor
  version 3.13. Please use DESeq2
** testing if installed package can be loaded from final location
Warning: Package 'DESeq' is deprecated and will be removed from Bioconductor
  version 3.13. Please use DESeq2
** testing if installed package keeps a record of temporary installation path

install for x64

* installing *source* package 'metaseqR' ...
** testing if installed package can be loaded
Warning: Package 'DESeq' is deprecated and will be removed from Bioconductor
  version 3.13. Please use DESeq2
* MD5 sums
packaged installation of 'metaseqR' as metaseqR_1.28.0.zip
* DONE (metaseqR)