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CHECK report for metaCCA on tokay2

This page was generated on 2020-10-17 11:57:02 -0400 (Sat, 17 Oct 2020).

TO THE DEVELOPERS/MAINTAINERS OF THE metaCCA PACKAGE: Please make sure to use the following settings in order to reproduce any error or warning you see on this page.
Package 1033/1905HostnameOS / ArchINSTALLBUILDCHECKBUILD BIN
metaCCA 1.16.0
Anna Cichonska
Snapshot Date: 2020-10-16 14:40:19 -0400 (Fri, 16 Oct 2020)
URL: https://git.bioconductor.org/packages/metaCCA
Branch: RELEASE_3_11
Last Commit: 39e473f
Last Changed Date: 2020-04-27 14:54:31 -0400 (Mon, 27 Apr 2020)
malbec2 Linux (Ubuntu 18.04.4 LTS) / x86_64  OK  OK  WARNINGS UNNEEDED, same version exists in internal repository
tokay2 Windows Server 2012 R2 Standard / x64  OK  OK [ WARNINGS ] OK UNNEEDED, same version exists in internal repository
machv2 macOS 10.14.6 Mojave / x86_64  OK  OK  WARNINGS  OK UNNEEDED, same version exists in internal repository

Summary

Package: metaCCA
Version: 1.16.0
Command: C:\Users\biocbuild\bbs-3.11-bioc\R\bin\R.exe CMD check --force-multiarch --install=check:metaCCA.install-out.txt --library=C:\Users\biocbuild\bbs-3.11-bioc\R\library --no-vignettes --timings metaCCA_1.16.0.tar.gz
StartedAt: 2020-10-17 05:49:19 -0400 (Sat, 17 Oct 2020)
EndedAt: 2020-10-17 05:49:52 -0400 (Sat, 17 Oct 2020)
EllapsedTime: 33.6 seconds
RetCode: 0
Status:  WARNINGS  
CheckDir: metaCCA.Rcheck
Warnings: 1

Command output

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###
### Running command:
###
###   C:\Users\biocbuild\bbs-3.11-bioc\R\bin\R.exe CMD check --force-multiarch --install=check:metaCCA.install-out.txt --library=C:\Users\biocbuild\bbs-3.11-bioc\R\library --no-vignettes --timings metaCCA_1.16.0.tar.gz
###
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* using log directory 'C:/Users/biocbuild/bbs-3.11-bioc/meat/metaCCA.Rcheck'
* using R version 4.0.3 (2020-10-10)
* using platform: x86_64-w64-mingw32 (64-bit)
* using session charset: ISO8859-1
* using option '--no-vignettes'
* checking for file 'metaCCA/DESCRIPTION' ... OK
* checking extension type ... Package
* this is package 'metaCCA' version '1.16.0'
* checking package namespace information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking if there is a namespace ... OK
* checking for hidden files and directories ... OK
* checking for portable file names ... OK
* checking whether package 'metaCCA' can be installed ... OK
* checking installed package size ... OK
* checking package directory ... OK
* checking 'build' directory ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking for left-over files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking R files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* loading checks for arch 'i386'
** checking whether the package can be loaded ... OK
** checking whether the package can be loaded with stated dependencies ... OK
** checking whether the package can be unloaded cleanly ... OK
** checking whether the namespace can be loaded with stated dependencies ... OK
** checking whether the namespace can be unloaded cleanly ... OK
* loading checks for arch 'x64'
** checking whether the package can be loaded ... OK
** checking whether the package can be loaded with stated dependencies ... OK
** checking whether the package can be unloaded cleanly ... OK
** checking whether the namespace can be loaded with stated dependencies ... OK
** checking whether the namespace can be unloaded cleanly ... OK
* checking dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... OK
* checking Rd files ... WARNING
man/metaCcaGp.Rd: non-ASCII input and no declared encoding
man/metaCcaPlusGp.Rd: non-ASCII input and no declared encoding
problems found in 'metaCcaGp.Rd', 'metaCcaPlusGp.Rd'
* checking Rd metadata ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking contents of 'data' directory ... OK
* checking data for non-ASCII characters ... OK
* checking data for ASCII and uncompressed saves ... OK
* checking files in 'vignettes' ... OK
* checking examples ...
** running examples for arch 'i386' ... OK
** running examples for arch 'x64' ... OK
* checking for unstated dependencies in vignettes ... OK
* checking package vignettes in 'inst/doc' ... OK
* checking running R code from vignettes ... SKIPPED
* checking re-building of vignette outputs ... SKIPPED
* checking PDF version of manual ... OK
* DONE

Status: 1 WARNING
See
  'C:/Users/biocbuild/bbs-3.11-bioc/meat/metaCCA.Rcheck/00check.log'
for details.



Installation output

metaCCA.Rcheck/00install.out

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###
### Running command:
###
###   C:\cygwin\bin\curl.exe -O https://malbec2.bioconductor.org/BBS/3.11/bioc/src/contrib/metaCCA_1.16.0.tar.gz && rm -rf metaCCA.buildbin-libdir && mkdir metaCCA.buildbin-libdir && C:\Users\biocbuild\bbs-3.11-bioc\R\bin\R.exe CMD INSTALL --merge-multiarch --build --library=metaCCA.buildbin-libdir metaCCA_1.16.0.tar.gz && C:\Users\biocbuild\bbs-3.11-bioc\R\bin\R.exe CMD INSTALL metaCCA_1.16.0.zip && rm metaCCA_1.16.0.tar.gz metaCCA_1.16.0.zip
###
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  % Total    % Received % Xferd  Average Speed   Time    Time     Time  Current
                                 Dload  Upload   Total   Spent    Left  Speed

  0     0    0     0    0     0      0      0 --:--:-- --:--:-- --:--:--     0
  0     0    0     0    0     0      0      0 --:--:-- --:--:-- --:--:--     0
 17  654k   17  112k    0     0  99937      0  0:00:06  0:00:01  0:00:05   98k
100  654k  100  654k    0     0   446k      0  0:00:01  0:00:01 --:--:--  450k

install for i386

* installing *source* package 'metaCCA' ...
** using staged installation
** R
** data
*** moving datasets to lazyload DB
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
  converting help for package 'metaCCA'
    finding HTML links ... done
    N1                                      html  
    N2                                      html  
    S_XX_study1                             html  
    S_XX_study2                             html  
    S_XY_full_study1                        html  
    S_XY_full_study2                        html  
    S_XY_study1                             html  
    S_XY_study2                             html  
    estimateSyy                             html  
    metaCcaGp                               html  
    metaCcaPlusGp                           html  
** building package indices
** installing vignettes
** testing if installed package can be loaded from temporary location
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path

install for x64

* installing *source* package 'metaCCA' ...
** testing if installed package can be loaded
* MD5 sums
packaged installation of 'metaCCA' as metaCCA_1.16.0.zip
* DONE (metaCCA)
* installing to library 'C:/Users/biocbuild/bbs-3.11-bioc/R/library'
package 'metaCCA' successfully unpacked and MD5 sums checked

Tests output


Example timings

metaCCA.Rcheck/examples_i386/metaCCA-Ex.timings

nameusersystemelapsed
estimateSyy0.020.000.02
metaCcaGp0.190.000.19
metaCcaPlusGp0.470.000.46

metaCCA.Rcheck/examples_x64/metaCCA-Ex.timings

nameusersystemelapsed
estimateSyy0.020.000.01
metaCcaGp0.230.000.24
metaCcaPlusGp0.680.000.68