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INSTALL report for iChip on tokay2

This page was generated on 2020-10-17 11:56:51 -0400 (Sat, 17 Oct 2020).

TO THE DEVELOPERS/MAINTAINERS OF THE iChip PACKAGE: Please make sure to use the following settings in order to reproduce any error or warning you see on this page.
Package 850/1905HostnameOS / ArchINSTALLBUILDCHECKBUILD BIN
iChip 1.42.0
Qianxing Mo
Snapshot Date: 2020-10-16 14:40:19 -0400 (Fri, 16 Oct 2020)
URL: https://git.bioconductor.org/packages/iChip
Branch: RELEASE_3_11
Last Commit: b432bc2
Last Changed Date: 2020-04-27 14:21:04 -0400 (Mon, 27 Apr 2020)
malbec2 Linux (Ubuntu 18.04.4 LTS) / x86_64  OK  OK  OK UNNEEDED, same version exists in internal repository
tokay2 Windows Server 2012 R2 Standard / x64 [ OK ] OK  OK  OK UNNEEDED, same version exists in internal repository
machv2 macOS 10.14.6 Mojave / x86_64  OK  OK  OK  OK UNNEEDED, same version exists in internal repository

Summary

Package: iChip
Version: 1.42.0
Command: C:\cygwin\bin\curl.exe -O https://malbec2.bioconductor.org/BBS/3.11/bioc/src/contrib/iChip_1.42.0.tar.gz && rm -rf iChip.buildbin-libdir && mkdir iChip.buildbin-libdir && C:\Users\biocbuild\bbs-3.11-bioc\R\bin\R.exe CMD INSTALL --merge-multiarch --build --library=iChip.buildbin-libdir iChip_1.42.0.tar.gz && C:\Users\biocbuild\bbs-3.11-bioc\R\bin\R.exe CMD INSTALL iChip_1.42.0.zip && rm iChip_1.42.0.tar.gz iChip_1.42.0.zip
StartedAt: 2020-10-16 16:59:16 -0400 (Fri, 16 Oct 2020)
EndedAt: 2020-10-16 16:59:53 -0400 (Fri, 16 Oct 2020)
EllapsedTime: 36.7 seconds
RetCode: 0
Status:  OK  

Command output

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###
### Running command:
###
###   C:\cygwin\bin\curl.exe -O https://malbec2.bioconductor.org/BBS/3.11/bioc/src/contrib/iChip_1.42.0.tar.gz && rm -rf iChip.buildbin-libdir && mkdir iChip.buildbin-libdir && C:\Users\biocbuild\bbs-3.11-bioc\R\bin\R.exe CMD INSTALL --merge-multiarch --build --library=iChip.buildbin-libdir iChip_1.42.0.tar.gz && C:\Users\biocbuild\bbs-3.11-bioc\R\bin\R.exe CMD INSTALL iChip_1.42.0.zip && rm iChip_1.42.0.tar.gz iChip_1.42.0.zip
###
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  % Total    % Received % Xferd  Average Speed   Time    Time     Time  Current
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  0     0    0     0    0     0      0      0 --:--:-- --:--:-- --:--:--     0
  0     0    0     0    0     0      0      0 --:--:-- --:--:-- --:--:--     0
100 2789k  100 2789k    0     0  11.8M      0 --:--:-- --:--:-- --:--:-- 12.2M

install for i386

* installing *source* package 'iChip' ...
** using staged installation
** libs
"C:/rtools40/mingw32/bin/"gcc  -I"C:/Users/BIOCBU~1/BBS-3~1.11-/R/include" -DNDEBUG     -I"C:/extsoft/include"     -O2 -Wall  -std=gnu99 -mfpmath=sse -msse2 -mstackrealign -c iChip.c -o iChip.o
iChip.c: In function 'iChip2':
iChip.c:23:51: warning: variable 'nrowm1' set but not used [-Wunused-but-set-variable]
   int sampleSize,LB,RB,i,j,r,nnoise,nsignal,state,nrowm1,wtsum;
                                                   ^~~~~~
"C:/rtools40/mingw32/bin/"gcc  -I"C:/Users/BIOCBU~1/BBS-3~1.11-/R/include" -DNDEBUG     -I"C:/extsoft/include"     -O2 -Wall  -std=gnu99 -mfpmath=sse -msse2 -mstackrealign -c registerDynamicSymbol.c -o registerDynamicSymbol.o
C:/rtools40/mingw32/bin/gcc -shared -s -static-libgcc -o iChip.dll tmp.def iChip.o registerDynamicSymbol.o -LC:/extsoft/lib/i386 -LC:/extsoft/lib -LC:/Users/BIOCBU~1/BBS-3~1.11-/R/bin/i386 -lR
installing to C:/Users/biocbuild/bbs-3.11-bioc/meat/iChip.buildbin-libdir/00LOCK-iChip/00new/iChip/libs/i386
** R
** data
*** moving datasets to lazyload DB
** demo
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
  converting help for package 'iChip'
    finding HTML links ... done
    enrichreg                               html  
    iChip1                                  html  
    iChip2                                  html  
    lmtstat                                 html  
    oct4                                    html  
    p53                                     html  
** building package indices
** installing vignettes
   'iChip.Rnw' 
** testing if installed package can be loaded from temporary location
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path

install for x64

* installing *source* package 'iChip' ...
** libs
"C:/rtools40/mingw64/bin/"gcc  -I"C:/Users/BIOCBU~1/BBS-3~1.11-/R/include" -DNDEBUG     -I"C:/extsoft/include"     -O2 -Wall  -std=gnu99 -mfpmath=sse -msse2 -mstackrealign -c iChip.c -o iChip.o
iChip.c: In function 'iChip2':
iChip.c:23:51: warning: variable 'nrowm1' set but not used [-Wunused-but-set-variable]
   int sampleSize,LB,RB,i,j,r,nnoise,nsignal,state,nrowm1,wtsum;
                                                   ^~~~~~
"C:/rtools40/mingw64/bin/"gcc  -I"C:/Users/BIOCBU~1/BBS-3~1.11-/R/include" -DNDEBUG     -I"C:/extsoft/include"     -O2 -Wall  -std=gnu99 -mfpmath=sse -msse2 -mstackrealign -c registerDynamicSymbol.c -o registerDynamicSymbol.o
C:/rtools40/mingw64/bin/gcc -shared -s -static-libgcc -o iChip.dll tmp.def iChip.o registerDynamicSymbol.o -LC:/extsoft/lib/x64 -LC:/extsoft/lib -LC:/Users/BIOCBU~1/BBS-3~1.11-/R/bin/x64 -lR
installing to C:/Users/biocbuild/bbs-3.11-bioc/meat/iChip.buildbin-libdir/iChip/libs/x64
** testing if installed package can be loaded
* MD5 sums
packaged installation of 'iChip' as iChip_1.42.0.zip
* DONE (iChip)
* installing to library 'C:/Users/biocbuild/bbs-3.11-bioc/R/library'
package 'iChip' successfully unpacked and MD5 sums checked