Constantin Ahlmann-Eltze
| Snapshot Date: 2020-10-16 14:40:19 -0400 (Fri, 16 Oct 2020) |
| URL: https://git.bioconductor.org/packages/glmGamPoi |
| Branch: RELEASE_3_11 |
| Last Commit: ea2224c |
| Last Changed Date: 2020-04-27 15:35:32 -0400 (Mon, 27 Apr 2020) |
| Back to Multiple platform build/check report for BioC 3.11 |
|
This page was generated on 2020-10-17 11:58:36 -0400 (Sat, 17 Oct 2020).
| TO THE DEVELOPERS/MAINTAINERS OF THE glmGamPoi PACKAGE: Please make sure to use the following settings in order to reproduce any error or warning you see on this page. |
| Package 739/1905 | Hostname | OS / Arch | INSTALL | BUILD | CHECK | BUILD BIN | ||||||
| glmGamPoi 1.0.0 Constantin Ahlmann-Eltze
| malbec2 | Linux (Ubuntu 18.04.4 LTS) / x86_64 | OK | OK | OK | | ||||||
| tokay2 | Windows Server 2012 R2 Standard / x64 | OK | OK | OK | OK | | ||||||
| machv2 | macOS 10.14.6 Mojave / x86_64 | OK | OK | OK | [ OK ] | |
| Package: glmGamPoi |
| Version: 1.0.0 |
| Command: rm -rf glmGamPoi.buildbin-libdir && mkdir glmGamPoi.buildbin-libdir && /Users/biocbuild/BBS/utils/build-universal.sh glmGamPoi_1.0.0.tar.gz /Library/Frameworks/R.framework/Versions/Current/Resources/bin/R glmGamPoi.buildbin-libdir |
| StartedAt: 2020-10-17 07:11:25 -0400 (Sat, 17 Oct 2020) |
| EndedAt: 2020-10-17 07:12:26 -0400 (Sat, 17 Oct 2020) |
| EllapsedTime: 60.6 seconds |
| RetCode: 0 |
| Status: OK |
| PackageFile: glmGamPoi_1.0.0.tgz |
| PackageFileSize: 599.7 KiB |
############################################################################## ############################################################################## ### ### Running command: ### ### rm -rf glmGamPoi.buildbin-libdir && mkdir glmGamPoi.buildbin-libdir && /Users/biocbuild/BBS/utils/build-universal.sh glmGamPoi_1.0.0.tar.gz /Library/Frameworks/R.framework/Versions/Current/Resources/bin/R glmGamPoi.buildbin-libdir ### ############################################################################## ############################################################################## >>>>>>> >>>>>>> INSTALLATION WITH 'R CMD INSTALL --preclean --no-multiarch --library=glmGamPoi.buildbin-libdir glmGamPoi_1.0.0.tar.gz' >>>>>>> * installing *source* package ‘glmGamPoi’ ... ** using staged installation ** libs clang++ -mmacosx-version-min=10.13 -std=gnu++11 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I../inst/include/ -I'/Library/Frameworks/R.framework/Versions/4.0/Resources/library/Rcpp/include' -I'/Library/Frameworks/R.framework/Versions/4.0/Resources/library/RcppArmadillo/include' -I'/Library/Frameworks/R.framework/Versions/4.0/Resources/library/beachmat/include' -I/usr/local/include -fPIC -Wall -g -O2 -c RcppExports.cpp -o RcppExports.o clang++ -mmacosx-version-min=10.13 -std=gnu++11 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I../inst/include/ -I'/Library/Frameworks/R.framework/Versions/4.0/Resources/library/Rcpp/include' -I'/Library/Frameworks/R.framework/Versions/4.0/Resources/library/RcppArmadillo/include' -I'/Library/Frameworks/R.framework/Versions/4.0/Resources/library/beachmat/include' -I/usr/local/include -fPIC -Wall -g -O2 -c beta_estimation.cpp -o beta_estimation.o clang++ -mmacosx-version-min=10.13 -std=gnu++11 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I../inst/include/ -I'/Library/Frameworks/R.framework/Versions/4.0/Resources/library/Rcpp/include' -I'/Library/Frameworks/R.framework/Versions/4.0/Resources/library/RcppArmadillo/include' -I'/Library/Frameworks/R.framework/Versions/4.0/Resources/library/beachmat/include' -I/usr/local/include -fPIC -Wall -g -O2 -c deviance.cpp -o deviance.o clang++ -mmacosx-version-min=10.13 -std=gnu++11 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I../inst/include/ -I'/Library/Frameworks/R.framework/Versions/4.0/Resources/library/Rcpp/include' -I'/Library/Frameworks/R.framework/Versions/4.0/Resources/library/RcppArmadillo/include' -I'/Library/Frameworks/R.framework/Versions/4.0/Resources/library/beachmat/include' -I/usr/local/include -fPIC -Wall -g -O2 -c overdispersion.cpp -o overdispersion.o clang++ -mmacosx-version-min=10.13 -std=gnu++11 -dynamiclib -Wl,-headerpad_max_install_names -undefined dynamic_lookup -single_module -multiply_defined suppress -L/Library/Frameworks/R.framework/Resources/lib -L/usr/local/lib -o glmGamPoi.so RcppExports.o beta_estimation.o deviance.o overdispersion.o -L/Library/Frameworks/R.framework/Resources/lib -lRlapack -L/Library/Frameworks/R.framework/Resources/lib -lRblas -L/usr/local/gfortran/lib/gcc/x86_64-apple-darwin18/8.2.0 -L/usr/local/gfortran/lib -lgfortran -lquadmath -lm -F/Library/Frameworks/R.framework/.. -framework R -Wl,-framework -Wl,CoreFoundation installing to /Users/biocbuild/bbs-3.11-bioc/meat/glmGamPoi.buildbin-libdir/00LOCK-glmGamPoi/00new/glmGamPoi/libs ** R ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices *** copying figures ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** checking absolute paths in shared objects and dynamic libraries ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (glmGamPoi) >>>>>>> >>>>>>> FIXING LINKS FOR glmGamPoi.buildbin-libdir/glmGamPoi/libs/glmGamPoi.so >>>>>>> install_name_tool -change "/usr/local/lib/libgcc_s.1.dylib" "/Library/Frameworks/R.framework/Versions/4.0/Resources/lib/libgcc_s.1.dylib" "glmGamPoi.buildbin-libdir/glmGamPoi/libs/glmGamPoi.so" install_name_tool -change "/usr/local/lib/libgfortran.5.dylib" "/Library/Frameworks/R.framework/Versions/4.0/Resources/lib/libgfortran.5.dylib" "glmGamPoi.buildbin-libdir/glmGamPoi/libs/glmGamPoi.so" install_name_tool -change "/usr/local/lib/libquadmath.0.dylib" "/Library/Frameworks/R.framework/Versions/4.0/Resources/lib/libquadmath.0.dylib" "glmGamPoi.buildbin-libdir/glmGamPoi/libs/glmGamPoi.so" install_name_tool -change "/usr/local/gfortran/lib/libgfortran.5.dylib" "/Library/Frameworks/R.framework/Versions/4.0/Resources/lib/libgfortran.5.dylib" "glmGamPoi.buildbin-libdir/glmGamPoi/libs/glmGamPoi.so" install_name_tool -change "/usr/local/gfortran/lib/libquadmath.0.dylib" "/Library/Frameworks/R.framework/Versions/4.0/Resources/lib/libquadmath.0.dylib" "glmGamPoi.buildbin-libdir/glmGamPoi/libs/glmGamPoi.so"