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BUILD BIN report for geecc on tokay2

This page was generated on 2020-10-17 11:56:38 -0400 (Sat, 17 Oct 2020).

TO THE DEVELOPERS/MAINTAINERS OF THE geecc PACKAGE: Please make sure to use the following settings in order to reproduce any error or warning you see on this page.
Package 668/1905HostnameOS / ArchINSTALLBUILDCHECKBUILD BIN
geecc 1.22.0
Markus Boenn
Snapshot Date: 2020-10-16 14:40:19 -0400 (Fri, 16 Oct 2020)
URL: https://git.bioconductor.org/packages/geecc
Branch: RELEASE_3_11
Last Commit: df8fea0
Last Changed Date: 2020-04-27 14:43:04 -0400 (Mon, 27 Apr 2020)
malbec2 Linux (Ubuntu 18.04.4 LTS) / x86_64  OK  OK  ERROR 
tokay2 Windows Server 2012 R2 Standard / x64  OK  OK  ERROR [ OK ]
machv2 macOS 10.14.6 Mojave / x86_64  OK  OK  ERROR  OK 

Summary

Package: geecc
Version: 1.22.0
Command: rm -rf geecc.buildbin-libdir && mkdir geecc.buildbin-libdir && C:\Users\biocbuild\bbs-3.11-bioc\R\bin\R.exe CMD INSTALL --merge-multiarch --build --library=geecc.buildbin-libdir geecc_1.22.0.tar.gz
StartedAt: 2020-10-17 10:34:59 -0400 (Sat, 17 Oct 2020)
EndedAt: 2020-10-17 10:36:23 -0400 (Sat, 17 Oct 2020)
EllapsedTime: 84.1 seconds
RetCode: 0
Status:  OK  
PackageFile: geecc_1.22.0.zip
PackageFileSize: 2.282 MiB

Command output

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### Running command:
###
###   rm -rf geecc.buildbin-libdir && mkdir geecc.buildbin-libdir && C:\Users\biocbuild\bbs-3.11-bioc\R\bin\R.exe CMD INSTALL --merge-multiarch --build --library=geecc.buildbin-libdir geecc_1.22.0.tar.gz
###
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install for i386

* installing *source* package 'geecc' ...
** using staged installation
** libs
"C:/rtools40/mingw32/bin/"g++ -std=gnu++11  -I"C:/Users/BIOCBU~1/BBS-3~1.11-/R/include" -DNDEBUG  -I'C:/Users/biocbuild/bbs-3.11-bioc/R/library/Rcpp/include'   -I"C:/extsoft/include"     -O2 -Wall  -mfpmath=sse -msse2 -mstackrealign -c RcppExports.cpp -o RcppExports.o
"C:/rtools40/mingw32/bin/"g++ -std=gnu++11  -I"C:/Users/BIOCBU~1/BBS-3~1.11-/R/include" -DNDEBUG  -I'C:/Users/biocbuild/bbs-3.11-bioc/R/library/Rcpp/include'   -I"C:/extsoft/include"     -O2 -Wall  -mfpmath=sse -msse2 -mstackrealign -c rcpp_hello_world.cpp -o rcpp_hello_world.o
"C:/rtools40/mingw32/bin/"g++ -std=gnu++11  -I"C:/Users/BIOCBU~1/BBS-3~1.11-/R/include" -DNDEBUG  -I'C:/Users/biocbuild/bbs-3.11-bioc/R/library/Rcpp/include'   -I"C:/extsoft/include"     -O2 -Wall  -mfpmath=sse -msse2 -mstackrealign -c specialists.cpp -o specialists.o
C:/rtools40/mingw32/bin/g++ -std=gnu++11 -shared -s -static-libgcc -o geecc.dll tmp.def RcppExports.o rcpp_hello_world.o specialists.o -LC:/extsoft/lib/i386 -LC:/extsoft/lib -LC:/Users/BIOCBU~1/BBS-3~1.11-/R/bin/i386 -lR
installing to C:/Users/biocbuild/bbs-3.11-bioc/meat/geecc.buildbin-libdir/00LOCK-geecc/00new/geecc/libs/i386
** R
** data
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
  converting help for package 'geecc'
    finding HTML links ... done
    GO2list                                 html  
    concub-class                            html  
    concubfilter-class                      html  
    filterConCub                            html  
    geecc-package                           html  
    marioni                                 html  
    plotConCub                              html  
    finding level-2 HTML links ... done

    pval2star                               html  
    runConCub                               html  
    setop                                   html  
** building package indices
** installing vignettes
** testing if installed package can be loaded from temporary location
Warning: Package 'geecc' is deprecated and will be removed from Bioconductor
  version 3.12
** testing if installed package can be loaded from final location
Warning: Package 'geecc' is deprecated and will be removed from Bioconductor
  version 3.12
** testing if installed package keeps a record of temporary installation path

install for x64

* installing *source* package 'geecc' ...
** libs
"C:/rtools40/mingw64/bin/"g++ -std=gnu++11  -I"C:/Users/BIOCBU~1/BBS-3~1.11-/R/include" -DNDEBUG  -I'C:/Users/biocbuild/bbs-3.11-bioc/R/library/Rcpp/include'   -I"C:/extsoft/include"     -O2 -Wall  -mfpmath=sse -msse2 -mstackrealign -c RcppExports.cpp -o RcppExports.o
"C:/rtools40/mingw64/bin/"g++ -std=gnu++11  -I"C:/Users/BIOCBU~1/BBS-3~1.11-/R/include" -DNDEBUG  -I'C:/Users/biocbuild/bbs-3.11-bioc/R/library/Rcpp/include'   -I"C:/extsoft/include"     -O2 -Wall  -mfpmath=sse -msse2 -mstackrealign -c rcpp_hello_world.cpp -o rcpp_hello_world.o
"C:/rtools40/mingw64/bin/"g++ -std=gnu++11  -I"C:/Users/BIOCBU~1/BBS-3~1.11-/R/include" -DNDEBUG  -I'C:/Users/biocbuild/bbs-3.11-bioc/R/library/Rcpp/include'   -I"C:/extsoft/include"     -O2 -Wall  -mfpmath=sse -msse2 -mstackrealign -c specialists.cpp -o specialists.o
C:/rtools40/mingw64/bin/g++ -std=gnu++11 -shared -s -static-libgcc -o geecc.dll tmp.def RcppExports.o rcpp_hello_world.o specialists.o -LC:/extsoft/lib/x64 -LC:/extsoft/lib -LC:/Users/BIOCBU~1/BBS-3~1.11-/R/bin/x64 -lR
installing to C:/Users/biocbuild/bbs-3.11-bioc/meat/geecc.buildbin-libdir/geecc/libs/x64
** testing if installed package can be loaded
Warning: Package 'geecc' is deprecated and will be removed from Bioconductor
  version 3.12
* MD5 sums
packaged installation of 'geecc' as geecc_1.22.0.zip
* DONE (geecc)