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INSTALL report for eegc on tokay2

This page was generated on 2020-10-17 11:56:30 -0400 (Sat, 17 Oct 2020).

TO THE DEVELOPERS/MAINTAINERS OF THE eegc PACKAGE: Please make sure to use the following settings in order to reproduce any error or warning you see on this page.
Package 530/1905HostnameOS / ArchINSTALLBUILDCHECKBUILD BIN
eegc 1.14.0
Xiaoyuan Zhou
Snapshot Date: 2020-10-16 14:40:19 -0400 (Fri, 16 Oct 2020)
URL: https://git.bioconductor.org/packages/eegc
Branch: RELEASE_3_11
Last Commit: fdd5e15
Last Changed Date: 2020-04-27 15:01:05 -0400 (Mon, 27 Apr 2020)
malbec2 Linux (Ubuntu 18.04.4 LTS) / x86_64  OK  OK  WARNINGS UNNEEDED, same version exists in internal repository
tokay2 Windows Server 2012 R2 Standard / x64 [ OK ] OK  WARNINGS  OK UNNEEDED, same version exists in internal repository
machv2 macOS 10.14.6 Mojave / x86_64  OK  OK  WARNINGS  OK UNNEEDED, same version exists in internal repository

Summary

Package: eegc
Version: 1.14.0
Command: C:\cygwin\bin\curl.exe -O https://malbec2.bioconductor.org/BBS/3.11/bioc/src/contrib/eegc_1.14.0.tar.gz && rm -rf eegc.buildbin-libdir && mkdir eegc.buildbin-libdir && C:\Users\biocbuild\bbs-3.11-bioc\R\bin\R.exe CMD INSTALL --merge-multiarch --build --library=eegc.buildbin-libdir eegc_1.14.0.tar.gz && C:\Users\biocbuild\bbs-3.11-bioc\R\bin\R.exe CMD INSTALL eegc_1.14.0.zip && rm eegc_1.14.0.tar.gz eegc_1.14.0.zip
StartedAt: 2020-10-16 18:49:45 -0400 (Fri, 16 Oct 2020)
EndedAt: 2020-10-16 18:51:25 -0400 (Fri, 16 Oct 2020)
EllapsedTime: 99.7 seconds
RetCode: 0
Status:  OK  

Command output

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###
### Running command:
###
###   C:\cygwin\bin\curl.exe -O https://malbec2.bioconductor.org/BBS/3.11/bioc/src/contrib/eegc_1.14.0.tar.gz && rm -rf eegc.buildbin-libdir && mkdir eegc.buildbin-libdir && C:\Users\biocbuild\bbs-3.11-bioc\R\bin\R.exe CMD INSTALL --merge-multiarch --build --library=eegc.buildbin-libdir eegc_1.14.0.tar.gz && C:\Users\biocbuild\bbs-3.11-bioc\R\bin\R.exe CMD INSTALL eegc_1.14.0.zip && rm eegc_1.14.0.tar.gz eegc_1.14.0.zip
###
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  % Total    % Received % Xferd  Average Speed   Time    Time     Time  Current
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  0     0    0     0    0     0      0      0 --:--:-- --:--:-- --:--:--     0
  0 9085k    0     0    0     0      0      0 --:--:-- --:--:-- --:--:--     0
100 9085k  100 9085k    0     0  39.2M      0 --:--:-- --:--:-- --:--:-- 40.1M

install for i386

* installing *source* package 'eegc' ...
** using staged installation
** R
** data
*** moving datasets to lazyload DB
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
  converting help for package 'eegc'
    finding HTML links ... done
    SandlerFPKM                             html  
    barplotEnrich                           html  
Rd warning: C:/Users/biocbuild/bbs-3.11-bioc/tmpdir/RtmpKWBNzg/R.INSTALL25c86b475861/eegc/man/barplotEnrich.Rd:29: missing file link 'barplot.enrichResult'
    cate.gene                               html  
    cate.ratio                              html  
    categorizeGene                          html  
    densityPlot                             html  
Rd warning: C:/Users/biocbuild/bbs-3.11-bioc/tmpdir/RtmpKWBNzg/R.INSTALL25c86b475861/eegc/man/densityPlot.Rd:29: file link 'plot' in package 'graphics' does not exist and so has been treated as a topic
    diffGene                                html  
    diffgene.genes                          html  
    dotPercentage                           html  
Rd warning: C:/Users/biocbuild/bbs-3.11-bioc/tmpdir/RtmpKWBNzg/R.INSTALL25c86b475861/eegc/man/dotPercentage.Rd:32: file link 'plot' in package 'graphics' does not exist and so has been treated as a topic
    eegc                                    html  
    enrichment                              html  
    expr.filter                             html  
    functionEnrich                          html  
Rd warning: C:/Users/biocbuild/bbs-3.11-bioc/tmpdir/RtmpKWBNzg/R.INSTALL25c86b475861/eegc/man/functionEnrich.Rd:17: file link 'org.Hs.eg.db' in package 'org.Hs.eg.db' does not exist and so has been treated as a topic
    goenrich                                html  
    grnPlot                                 html  
Rd warning: C:/Users/biocbuild/bbs-3.11-bioc/tmpdir/RtmpKWBNzg/R.INSTALL25c86b475861/eegc/man/grnPlot.Rd:33: file link 'igraph.plotting' in package 'igraph' does not exist and so has been treated as a topic
Rd warning: C:/Users/biocbuild/bbs-3.11-bioc/tmpdir/RtmpKWBNzg/R.INSTALL25c86b475861/eegc/man/grnPlot.Rd:36: file link 'igraph.plotting' in package 'igraph' does not exist and so has been treated as a topic
Rd warning: C:/Users/biocbuild/bbs-3.11-bioc/tmpdir/RtmpKWBNzg/R.INSTALL25c86b475861/eegc/man/grnPlot.Rd:38: file link 'layout' in package 'igraph' does not exist and so has been treated as a topic
Rd warning: C:/Users/biocbuild/bbs-3.11-bioc/tmpdir/RtmpKWBNzg/R.INSTALL25c86b475861/eegc/man/grnPlot.Rd:42: file link 'igraph.plotting' in package 'igraph' does not exist and so has been treated as a topic
    heatmapPlot                             html  
    human.gene                              html  
    human.grn                               html  
    human.tf                                html  
    markerScatter                           html  
Rd warning: C:/Users/biocbuild/bbs-3.11-bioc/tmpdir/RtmpKWBNzg/R.INSTALL25c86b475861/eegc/man/markerScatter.Rd:30: file link 'plot' in package 'graphics' does not exist and so has been treated as a topic
    markers                                 html  
    mouse.gene                              html  
    mouse.grn                               html  
    mouse.tf                                html  
    networkAnalyze                          html  
    tissueGenes                             html  
    tissueGroup                             html  
** building package indices
** installing vignettes
   'eegc.Rnw' 
** testing if installed package can be loaded from temporary location
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path

install for x64

* installing *source* package 'eegc' ...
** testing if installed package can be loaded
* MD5 sums
packaged installation of 'eegc' as eegc_1.14.0.zip
* DONE (eegc)
* installing to library 'C:/Users/biocbuild/bbs-3.11-bioc/R/library'
package 'eegc' successfully unpacked and MD5 sums checked