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INSTALL report for Sushi on tokay2

This page was generated on 2020-10-17 11:57:54 -0400 (Sat, 17 Oct 2020).

TO THE DEVELOPERS/MAINTAINERS OF THE Sushi PACKAGE: Please make sure to use the following settings in order to reproduce any error or warning you see on this page.
Package 1762/1905HostnameOS / ArchINSTALLBUILDCHECKBUILD BIN
Sushi 1.26.0
Douglas H Phanstiel
Snapshot Date: 2020-10-16 14:40:19 -0400 (Fri, 16 Oct 2020)
URL: https://git.bioconductor.org/packages/Sushi
Branch: RELEASE_3_11
Last Commit: f64b1a4
Last Changed Date: 2020-04-27 14:39:59 -0400 (Mon, 27 Apr 2020)
malbec2 Linux (Ubuntu 18.04.4 LTS) / x86_64  OK  OK  WARNINGS UNNEEDED, same version exists in internal repository
tokay2 Windows Server 2012 R2 Standard / x64 [ OK ] OK  WARNINGS  NA 
machv2 macOS 10.14.6 Mojave / x86_64  OK  OK  WARNINGS  OK UNNEEDED, same version exists in internal repository

Summary

Package: Sushi
Version: 1.26.0
Command: C:\cygwin\bin\curl.exe -O https://malbec2.bioconductor.org/BBS/3.11/bioc/src/contrib/Sushi_1.26.0.tar.gz && rm -rf Sushi.buildbin-libdir && mkdir Sushi.buildbin-libdir && C:\Users\biocbuild\bbs-3.11-bioc\R\bin\R.exe CMD INSTALL --merge-multiarch --build --library=Sushi.buildbin-libdir Sushi_1.26.0.tar.gz && C:\Users\biocbuild\bbs-3.11-bioc\R\bin\R.exe CMD INSTALL Sushi_1.26.0.zip && rm Sushi_1.26.0.tar.gz Sushi_1.26.0.zip
StartedAt: 2020-10-16 17:44:24 -0400 (Fri, 16 Oct 2020)
EndedAt: 2020-10-16 17:45:29 -0400 (Fri, 16 Oct 2020)
EllapsedTime: 64.7 seconds
RetCode: 0
Status:  OK  

Command output

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###
### Running command:
###
###   C:\cygwin\bin\curl.exe -O https://malbec2.bioconductor.org/BBS/3.11/bioc/src/contrib/Sushi_1.26.0.tar.gz && rm -rf Sushi.buildbin-libdir && mkdir Sushi.buildbin-libdir && C:\Users\biocbuild\bbs-3.11-bioc\R\bin\R.exe CMD INSTALL --merge-multiarch --build --library=Sushi.buildbin-libdir Sushi_1.26.0.tar.gz && C:\Users\biocbuild\bbs-3.11-bioc\R\bin\R.exe CMD INSTALL Sushi_1.26.0.zip && rm Sushi_1.26.0.tar.gz Sushi_1.26.0.zip
###
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  0     0    0     0    0     0      0      0 --:--:-- --:--:-- --:--:--     0
  0 4024k    0 16384    0     0  32687      0  0:02:06 --:--:--  0:02:06 33032
100 4024k  100 4024k    0     0  7323k      0 --:--:-- --:--:-- --:--:-- 7397k

install for i386

* installing *source* package 'Sushi' ...
** using staged installation
** R
** data
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
  converting help for package 'Sushi'
    finding HTML links ... done
    SushiColors                             html  
    Sushi_5C.bedpe                          html  
    Sushi_ChIAPET_pol2.bedpe                html  
    Sushi_ChIPExo_CTCF.bedgraph             html  
    Sushi_ChIPSeq_CTCF.bedgraph             html  
    Sushi_ChIPSeq_pol2.bed                  html  
    Sushi_ChIPSeq_pol2.bedgraph             html  
    Sushi_ChIPSeq_severalfactors.bed        html  
    Sushi_DNaseI.bedgraph                   html  
    Sushi_GWAS.bed                          html  
    Sushi_HiC.matrix                        html  
    Sushi_RNASeq_K562.bedgraph              html  
    Sushi_genes.bed                         html  
    Sushi_hg18_genome                       html  
    Sushi_transcripts.bed                   html  
    addlegend                               html  
    chromOffsets                            html  
    convertstrandinfo                       html  
    labelgenome                             html  
    labelplot                               html  
    maptocolors                             html  
    maptolwd                                html  
    opaque                                  html  
    plotBed                                 html  
    plotBedgraph                            html  
    plotBedpe                               html  
    plotGenes                               html  
    finding level-2 HTML links ... done

    plotHic                                 html  
    plotManhattan                           html  
    sortChrom                               html  
    zoombox                                 html  
    zoomsregion                             html  
** building package indices
** installing vignettes
** testing if installed package can be loaded from temporary location
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path

install for x64

* installing *source* package 'Sushi' ...
** testing if installed package can be loaded
* MD5 sums
packaged installation of 'Sushi' as Sushi_1.26.0.zip
* DONE (Sushi)
* installing to library 'C:/Users/biocbuild/bbs-3.11-bioc/R/library'
package 'Sushi' successfully unpacked and MD5 sums checked