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###
### Running command:
###
### C:\cygwin\bin\curl.exe -O https://malbec2.bioconductor.org/BBS/3.11/bioc/src/contrib/SharedObject_1.2.2.tar.gz && rm -rf SharedObject.buildbin-libdir && mkdir SharedObject.buildbin-libdir && C:\Users\biocbuild\bbs-3.11-bioc\R\bin\R.exe CMD INSTALL --merge-multiarch --build --library=SharedObject.buildbin-libdir SharedObject_1.2.2.tar.gz && C:\Users\biocbuild\bbs-3.11-bioc\R\bin\R.exe CMD INSTALL SharedObject_1.2.2.zip && rm SharedObject_1.2.2.tar.gz SharedObject_1.2.2.zip
###
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% Total % Received % Xferd Average Speed Time Time Time Current
Dload Upload Total Spent Left Speed
0 0 0 0 0 0 0 0 --:--:-- --:--:-- --:--:-- 0
100 30000 100 30000 0 0 520k 0 --:--:-- --:--:-- --:--:-- 597k
install for i386
* installing *source* package 'SharedObject' ...
** using staged installation
** libs
rm -f "../inst/include/SharedObject/sharedMemory.h" &&\
rm -f "../inst/usrlib/i386/SharedObject.a" &&\
mkdir -p ../inst/include&&\
mkdir -p ../inst/include/SharedObject&&\
mkdir -p ../inst/usrlib/i386
"C:/rtools40/mingw32/bin/"g++ -std=gnu++11 -I"C:/Users/BIOCBU~1/BBS-3~1.11-/R/include" -DNDEBUG -DRCPP_USE_UNWIND_PROTECT -I'C:/Users/biocbuild/bbs-3.11-bioc/R/library/BH/include' -I'C:/Users/biocbuild/bbs-3.11-bioc/R/library/Rcpp/include' -I"C:/extsoft/include" -O2 -Wall -mfpmath=sse -msse2 -mstackrealign -c C_interface.cpp -o C_interface.o
"C:/rtools40/mingw32/bin/"g++ -std=gnu++11 -I"C:/Users/BIOCBU~1/BBS-3~1.11-/R/include" -DNDEBUG -DRCPP_USE_UNWIND_PROTECT -I'C:/Users/biocbuild/bbs-3.11-bioc/R/library/BH/include' -I'C:/Users/biocbuild/bbs-3.11-bioc/R/library/Rcpp/include' -I"C:/extsoft/include" -O2 -Wall -mfpmath=sse -msse2 -mstackrealign -c RcppExports.cpp -o RcppExports.o
"C:/rtools40/mingw32/bin/"g++ -std=gnu++11 -I"C:/Users/BIOCBU~1/BBS-3~1.11-/R/include" -DNDEBUG -DRCPP_USE_UNWIND_PROTECT -I'C:/Users/biocbuild/bbs-3.11-bioc/R/library/BH/include' -I'C:/Users/biocbuild/bbs-3.11-bioc/R/library/Rcpp/include' -I"C:/extsoft/include" -O2 -Wall -mfpmath=sse -msse2 -mstackrealign -c altrepRegistration.cpp -o altrepRegistration.o
"C:/rtools40/mingw32/bin/"g++ -std=gnu++11 -I"C:/Users/BIOCBU~1/BBS-3~1.11-/R/include" -DNDEBUG -DRCPP_USE_UNWIND_PROTECT -I'C:/Users/biocbuild/bbs-3.11-bioc/R/library/BH/include' -I'C:/Users/biocbuild/bbs-3.11-bioc/R/library/Rcpp/include' -I"C:/extsoft/include" -O2 -Wall -mfpmath=sse -msse2 -mstackrealign -c sharedMemory.cpp -o sharedMemory.o
In file included from C:/Users/biocbuild/bbs-3.11-bioc/R/library/BH/include/boost/smart_ptr/shared_ptr.hpp:28,
from C:/Users/biocbuild/bbs-3.11-bioc/R/library/BH/include/boost/shared_ptr.hpp:17,
from C:/Users/biocbuild/bbs-3.11-bioc/R/library/BH/include/boost/date_time/microsec_time_clock.hpp:18,
from C:/Users/biocbuild/bbs-3.11-bioc/R/library/BH/include/boost/interprocess/detail/posix_time_types_wrk.hpp:31,
from C:/Users/biocbuild/bbs-3.11-bioc/R/library/BH/include/boost/interprocess/sync/spin/mutex.hpp:24,
from C:/Users/biocbuild/bbs-3.11-bioc/R/library/BH/include/boost/interprocess/sync/windows/sync_utils.hpp:25,
from C:/Users/biocbuild/bbs-3.11-bioc/R/library/BH/include/boost/interprocess/mapped_region.hpp:50,
from sharedMemory.cpp:16:
C:/Users/biocbuild/bbs-3.11-bioc/R/library/BH/include/boost/smart_ptr/detail/shared_count.hpp:356:33: warning: 'template<class> class std::auto_ptr' is deprecated [-Wdeprecated-declarations]
explicit shared_count( std::auto_ptr<Y> & r ): pi_( new sp_counted_impl_p<Y>( r.get() ) )
^~~~~~~~
In file included from C:/rtools40/mingw32/include/c++/8.3.0/bits/locale_conv.h:41,
from C:/rtools40/mingw32/include/c++/8.3.0/locale:43,
from C:/rtools40/mingw32/include/c++/8.3.0/iomanip:43,
from C:/Users/biocbuild/bbs-3.11-bioc/R/library/Rcpp/include/RcppCommon.h:52,
from C:/Users/biocbuild/bbs-3.11-bioc/R/library/Rcpp/include/Rcpp.h:27,
from sharedMemory.cpp:15:
C:/rtools40/mingw32/include/c++/8.3.0/bits/unique_ptr.h:53:28: note: declared here
template<typename> class auto_ptr;
^~~~~~~~
In file included from C:/Users/biocbuild/bbs-3.11-bioc/R/library/BH/include/boost/shared_ptr.hpp:17,
from C:/Users/biocbuild/bbs-3.11-bioc/R/library/BH/include/boost/date_time/microsec_time_clock.hpp:18,
from C:/Users/biocbuild/bbs-3.11-bioc/R/library/BH/include/boost/interprocess/detail/posix_time_types_wrk.hpp:31,
from C:/Users/biocbuild/bbs-3.11-bioc/R/library/BH/include/boost/interprocess/sync/spin/mutex.hpp:24,
from C:/Users/biocbuild/bbs-3.11-bioc/R/library/BH/include/boost/interprocess/sync/windows/sync_utils.hpp:25,
from C:/Users/biocbuild/bbs-3.11-bioc/R/library/BH/include/boost/interprocess/mapped_region.hpp:50,
from sharedMemory.cpp:16:
C:/Users/biocbuild/bbs-3.11-bioc/R/library/BH/include/boost/smart_ptr/shared_ptr.hpp:256:65: warning: 'template<class> class std::auto_ptr' is deprecated [-Wdeprecated-declarations]
template< class T, class R > struct sp_enable_if_auto_ptr< std::auto_ptr< T >, R >
^~~~~~~~
In file included from C:/rtools40/mingw32/include/c++/8.3.0/bits/locale_conv.h:41,
from C:/rtools40/mingw32/include/c++/8.3.0/locale:43,
from C:/rtools40/mingw32/include/c++/8.3.0/iomanip:43,
from C:/Users/biocbuild/bbs-3.11-bioc/R/library/Rcpp/include/RcppCommon.h:52,
from C:/Users/biocbuild/bbs-3.11-bioc/R/library/Rcpp/include/Rcpp.h:27,
from sharedMemory.cpp:15:
C:/rtools40/mingw32/include/c++/8.3.0/bits/unique_ptr.h:53:28: note: declared here
template<typename> class auto_ptr;
^~~~~~~~
In file included from C:/Users/biocbuild/bbs-3.11-bioc/R/library/BH/include/boost/shared_ptr.hpp:17,
from C:/Users/biocbuild/bbs-3.11-bioc/R/library/BH/include/boost/date_time/microsec_time_clock.hpp:18,
from C:/Users/biocbuild/bbs-3.11-bioc/R/library/BH/include/boost/interprocess/detail/posix_time_types_wrk.hpp:31,
from C:/Users/biocbuild/bbs-3.11-bioc/R/library/BH/include/boost/interprocess/sync/spin/mutex.hpp:24,
from C:/Users/biocbuild/bbs-3.11-bioc/R/library/BH/include/boost/interprocess/sync/windows/sync_utils.hpp:25,
from C:/Users/biocbuild/bbs-3.11-bioc/R/library/BH/include/boost/interprocess/mapped_region.hpp:50,
from sharedMemory.cpp:16:
C:/Users/biocbuild/bbs-3.11-bioc/R/library/BH/include/boost/smart_ptr/shared_ptr.hpp:471:31: warning: 'template<class> class std::auto_ptr' is deprecated [-Wdeprecated-declarations]
explicit shared_ptr( std::auto_ptr<Y> & r ): px(r.get()), pn()
^~~~~~~~
In file included from C:/rtools40/mingw32/include/c++/8.3.0/bits/locale_conv.h:41,
from C:/rtools40/mingw32/include/c++/8.3.0/locale:43,
from C:/rtools40/mingw32/include/c++/8.3.0/iomanip:43,
from C:/Users/biocbuild/bbs-3.11-bioc/R/library/Rcpp/include/RcppCommon.h:52,
from C:/Users/biocbuild/bbs-3.11-bioc/R/library/Rcpp/include/Rcpp.h:27,
from sharedMemory.cpp:15:
C:/rtools40/mingw32/include/c++/8.3.0/bits/unique_ptr.h:53:28: note: declared here
template<typename> class auto_ptr;
^~~~~~~~
In file included from C:/Users/biocbuild/bbs-3.11-bioc/R/library/BH/include/boost/shared_ptr.hpp:17,
from C:/Users/biocbuild/bbs-3.11-bioc/R/library/BH/include/boost/date_time/microsec_time_clock.hpp:18,
from C:/Users/biocbuild/bbs-3.11-bioc/R/library/BH/include/boost/interprocess/detail/posix_time_types_wrk.hpp:31,
from C:/Users/biocbuild/bbs-3.11-bioc/R/library/BH/include/boost/interprocess/sync/spin/mutex.hpp:24,
from C:/Users/biocbuild/bbs-3.11-bioc/R/library/BH/include/boost/interprocess/sync/windows/sync_utils.hpp:25,
from C:/Users/biocbuild/bbs-3.11-bioc/R/library/BH/include/boost/interprocess/mapped_region.hpp:50,
from sharedMemory.cpp:16:
C:/Users/biocbuild/bbs-3.11-bioc/R/library/BH/include/boost/smart_ptr/shared_ptr.hpp:484:22: warning: 'template<class> class std::auto_ptr' is deprecated [-Wdeprecated-declarations]
shared_ptr( std::auto_ptr<Y> && r ): px(r.get()), pn()
^~~~~~~~
In file included from C:/rtools40/mingw32/include/c++/8.3.0/bits/locale_conv.h:41,
from C:/rtools40/mingw32/include/c++/8.3.0/locale:43,
from C:/rtools40/mingw32/include/c++/8.3.0/iomanip:43,
from C:/Users/biocbuild/bbs-3.11-bioc/R/library/Rcpp/include/RcppCommon.h:52,
from C:/Users/biocbuild/bbs-3.11-bioc/R/library/Rcpp/include/Rcpp.h:27,
from sharedMemory.cpp:15:
C:/rtools40/mingw32/include/c++/8.3.0/bits/unique_ptr.h:53:28: note: declared here
template<typename> class auto_ptr;
^~~~~~~~
In file included from C:/Users/biocbuild/bbs-3.11-bioc/R/library/BH/include/boost/shared_ptr.hpp:17,
from C:/Users/biocbuild/bbs-3.11-bioc/R/library/BH/include/boost/date_time/microsec_time_clock.hpp:18,
from C:/Users/biocbuild/bbs-3.11-bioc/R/library/BH/include/boost/interprocess/detail/posix_time_types_wrk.hpp:31,
from C:/Users/biocbuild/bbs-3.11-bioc/R/library/BH/include/boost/interprocess/sync/spin/mutex.hpp:24,
from C:/Users/biocbuild/bbs-3.11-bioc/R/library/BH/include/boost/interprocess/sync/windows/sync_utils.hpp:25,
from C:/Users/biocbuild/bbs-3.11-bioc/R/library/BH/include/boost/interprocess/mapped_region.hpp:50,
from sharedMemory.cpp:16:
C:/Users/biocbuild/bbs-3.11-bioc/R/library/BH/include/boost/smart_ptr/shared_ptr.hpp:567:34: warning: 'template<class> class std::auto_ptr' is deprecated [-Wdeprecated-declarations]
shared_ptr & operator=( std::auto_ptr<Y> & r )
^~~~~~~~
In file included from C:/rtools40/mingw32/include/c++/8.3.0/bits/locale_conv.h:41,
from C:/rtools40/mingw32/include/c++/8.3.0/locale:43,
from C:/rtools40/mingw32/include/c++/8.3.0/iomanip:43,
from C:/Users/biocbuild/bbs-3.11-bioc/R/library/Rcpp/include/RcppCommon.h:52,
from C:/Users/biocbuild/bbs-3.11-bioc/R/library/Rcpp/include/Rcpp.h:27,
from sharedMemory.cpp:15:
C:/rtools40/mingw32/include/c++/8.3.0/bits/unique_ptr.h:53:28: note: declared here
template<typename> class auto_ptr;
^~~~~~~~
In file included from C:/Users/biocbuild/bbs-3.11-bioc/R/library/BH/include/boost/shared_ptr.hpp:17,
from C:/Users/biocbuild/bbs-3.11-bioc/R/library/BH/include/boost/date_time/microsec_time_clock.hpp:18,
from C:/Users/biocbuild/bbs-3.11-bioc/R/library/BH/include/boost/interprocess/detail/posix_time_types_wrk.hpp:31,
from C:/Users/biocbuild/bbs-3.11-bioc/R/library/BH/include/boost/interprocess/sync/spin/mutex.hpp:24,
from C:/Users/biocbuild/bbs-3.11-bioc/R/library/BH/include/boost/interprocess/sync/windows/sync_utils.hpp:25,
from C:/Users/biocbuild/bbs-3.11-bioc/R/library/BH/include/boost/interprocess/mapped_region.hpp:50,
from sharedMemory.cpp:16:
C:/Users/biocbuild/bbs-3.11-bioc/R/library/BH/include/boost/smart_ptr/shared_ptr.hpp:576:34: warning: 'template<class> class std::auto_ptr' is deprecated [-Wdeprecated-declarations]
shared_ptr & operator=( std::auto_ptr<Y> && r )
^~~~~~~~
In file included from C:/rtools40/mingw32/include/c++/8.3.0/bits/locale_conv.h:41,
from C:/rtools40/mingw32/include/c++/8.3.0/locale:43,
from C:/rtools40/mingw32/include/c++/8.3.0/iomanip:43,
from C:/Users/biocbuild/bbs-3.11-bioc/R/library/Rcpp/include/RcppCommon.h:52,
from C:/Users/biocbuild/bbs-3.11-bioc/R/library/Rcpp/include/Rcpp.h:27,
from sharedMemory.cpp:15:
C:/rtools40/mingw32/include/c++/8.3.0/bits/unique_ptr.h:53:28: note: declared here
template<typename> class auto_ptr;
^~~~~~~~
In file included from C:/Users/biocbuild/bbs-3.11-bioc/R/library/BH/include/boost/shared_ptr.hpp:17,
from C:/Users/biocbuild/bbs-3.11-bioc/R/library/BH/include/boost/date_time/microsec_time_clock.hpp:18,
from C:/Users/biocbuild/bbs-3.11-bioc/R/library/BH/include/boost/interprocess/detail/posix_time_types_wrk.hpp:31,
from C:/Users/biocbuild/bbs-3.11-bioc/R/library/BH/include/boost/interprocess/sync/spin/mutex.hpp:24,
from C:/Users/biocbuild/bbs-3.11-bioc/R/library/BH/include/boost/interprocess/sync/windows/sync_utils.hpp:25,
from C:/Users/biocbuild/bbs-3.11-bioc/R/library/BH/include/boost/interprocess/mapped_region.hpp:50,
from sharedMemory.cpp:16:
C:/Users/biocbuild/bbs-3.11-bioc/R/library/BH/include/boost/smart_ptr/shared_ptr.hpp: In member function 'boost::shared_ptr<T>& boost::shared_ptr<T>::operator=(std::auto_ptr<_Up>&&)':
C:/Users/biocbuild/bbs-3.11-bioc/R/library/BH/include/boost/smart_ptr/shared_ptr.hpp:578:38: warning: 'template<class> class std::auto_ptr' is deprecated [-Wdeprecated-declarations]
this_type( static_cast< std::auto_ptr<Y> && >( r ) ).swap( *this );
^~~~~~~~
In file included from C:/rtools40/mingw32/include/c++/8.3.0/bits/locale_conv.h:41,
from C:/rtools40/mingw32/include/c++/8.3.0/locale:43,
from C:/rtools40/mingw32/include/c++/8.3.0/iomanip:43,
from C:/Users/biocbuild/bbs-3.11-bioc/R/library/Rcpp/include/RcppCommon.h:52,
from C:/Users/biocbuild/bbs-3.11-bioc/R/library/Rcpp/include/Rcpp.h:27,
from sharedMemory.cpp:15:
C:/rtools40/mingw32/include/c++/8.3.0/bits/unique_ptr.h:53:28: note: declared here
template<typename> class auto_ptr;
^~~~~~~~
"C:/rtools40/mingw32/bin/"g++ -std=gnu++11 -I"C:/Users/BIOCBU~1/BBS-3~1.11-/R/include" -DNDEBUG -DRCPP_USE_UNWIND_PROTECT -I'C:/Users/biocbuild/bbs-3.11-bioc/R/library/BH/include' -I'C:/Users/biocbuild/bbs-3.11-bioc/R/library/Rcpp/include' -I"C:/extsoft/include" -O2 -Wall -mfpmath=sse -msse2 -mstackrealign -c tools.cpp -o tools.o
C:/rtools40/mingw32/bin/g++ -shared -s -static-libgcc -o SharedObject.dll tmp.def C_interface.o RcppExports.o altrepRegistration.o sharedMemory.o tools.o -LC:/extsoft/lib/i386 -LC:/extsoft/lib -LC:/Users/BIOCBU~1/BBS-3~1.11-/R/bin/i386 -lR
"C:/rtools40/mingw32/bin/"ar -crv SharedObject.a *.o
a - C_interface.o
a - RcppExports.o
a - altrepRegistration.o
a - sharedMemory.o
a - tools.o
cp "sharedMemory.h" "../inst/include/SharedObject/"&&\
cp "SharedObject.a" "../inst/usrlib/i386/"
installing to C:/Users/biocbuild/bbs-3.11-bioc/meat/SharedObject.buildbin-libdir/00LOCK-SharedObject/00new/SharedObject/libs/i386
** R
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
converting help for package 'SharedObject'
finding HTML links ... done
developer-API html
is.altrep html
is.shared html
listSharedObject html
pkgconfig html
share html
sharedObjectOptions html
sharedObjectProperty html
** building package indices
** installing vignettes
** testing if installed package can be loaded from temporary location
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path
install for x64
* installing *source* package 'SharedObject' ...
** libs
rm -f "../inst/include/SharedObject/sharedMemory.h" &&\
rm -f "../inst/usrlib/x64/SharedObject.a" &&\
mkdir -p ../inst/include&&\
mkdir -p ../inst/include/SharedObject&&\
mkdir -p ../inst/usrlib/x64
"C:/rtools40/mingw64/bin/"g++ -std=gnu++11 -I"C:/Users/BIOCBU~1/BBS-3~1.11-/R/include" -DNDEBUG -DRCPP_USE_UNWIND_PROTECT -I'C:/Users/biocbuild/bbs-3.11-bioc/R/library/BH/include' -I'C:/Users/biocbuild/bbs-3.11-bioc/R/library/Rcpp/include' -I"C:/extsoft/include" -O2 -Wall -mfpmath=sse -msse2 -mstackrealign -c C_interface.cpp -o C_interface.o
"C:/rtools40/mingw64/bin/"g++ -std=gnu++11 -I"C:/Users/BIOCBU~1/BBS-3~1.11-/R/include" -DNDEBUG -DRCPP_USE_UNWIND_PROTECT -I'C:/Users/biocbuild/bbs-3.11-bioc/R/library/BH/include' -I'C:/Users/biocbuild/bbs-3.11-bioc/R/library/Rcpp/include' -I"C:/extsoft/include" -O2 -Wall -mfpmath=sse -msse2 -mstackrealign -c RcppExports.cpp -o RcppExports.o
"C:/rtools40/mingw64/bin/"g++ -std=gnu++11 -I"C:/Users/BIOCBU~1/BBS-3~1.11-/R/include" -DNDEBUG -DRCPP_USE_UNWIND_PROTECT -I'C:/Users/biocbuild/bbs-3.11-bioc/R/library/BH/include' -I'C:/Users/biocbuild/bbs-3.11-bioc/R/library/Rcpp/include' -I"C:/extsoft/include" -O2 -Wall -mfpmath=sse -msse2 -mstackrealign -c altrepRegistration.cpp -o altrepRegistration.o
"C:/rtools40/mingw64/bin/"g++ -std=gnu++11 -I"C:/Users/BIOCBU~1/BBS-3~1.11-/R/include" -DNDEBUG -DRCPP_USE_UNWIND_PROTECT -I'C:/Users/biocbuild/bbs-3.11-bioc/R/library/BH/include' -I'C:/Users/biocbuild/bbs-3.11-bioc/R/library/Rcpp/include' -I"C:/extsoft/include" -O2 -Wall -mfpmath=sse -msse2 -mstackrealign -c sharedMemory.cpp -o sharedMemory.o
In file included from C:/Users/biocbuild/bbs-3.11-bioc/R/library/BH/include/boost/smart_ptr/shared_ptr.hpp:28,
from C:/Users/biocbuild/bbs-3.11-bioc/R/library/BH/include/boost/shared_ptr.hpp:17,
from C:/Users/biocbuild/bbs-3.11-bioc/R/library/BH/include/boost/date_time/microsec_time_clock.hpp:18,
from C:/Users/biocbuild/bbs-3.11-bioc/R/library/BH/include/boost/interprocess/detail/posix_time_types_wrk.hpp:31,
from C:/Users/biocbuild/bbs-3.11-bioc/R/library/BH/include/boost/interprocess/sync/spin/mutex.hpp:24,
from C:/Users/biocbuild/bbs-3.11-bioc/R/library/BH/include/boost/interprocess/sync/windows/sync_utils.hpp:25,
from C:/Users/biocbuild/bbs-3.11-bioc/R/library/BH/include/boost/interprocess/mapped_region.hpp:50,
from sharedMemory.cpp:16:
C:/Users/biocbuild/bbs-3.11-bioc/R/library/BH/include/boost/smart_ptr/detail/shared_count.hpp:356:33: warning: 'template<class> class std::auto_ptr' is deprecated [-Wdeprecated-declarations]
explicit shared_count( std::auto_ptr<Y> & r ): pi_( new sp_counted_impl_p<Y>( r.get() ) )
^~~~~~~~
In file included from C:/rtools40/mingw64/include/c++/8.3.0/bits/locale_conv.h:41,
from C:/rtools40/mingw64/include/c++/8.3.0/locale:43,
from C:/rtools40/mingw64/include/c++/8.3.0/iomanip:43,
from C:/Users/biocbuild/bbs-3.11-bioc/R/library/Rcpp/include/RcppCommon.h:52,
from C:/Users/biocbuild/bbs-3.11-bioc/R/library/Rcpp/include/Rcpp.h:27,
from sharedMemory.cpp:15:
C:/rtools40/mingw64/include/c++/8.3.0/bits/unique_ptr.h:53:28: note: declared here
template<typename> class auto_ptr;
^~~~~~~~
In file included from C:/Users/biocbuild/bbs-3.11-bioc/R/library/BH/include/boost/shared_ptr.hpp:17,
from C:/Users/biocbuild/bbs-3.11-bioc/R/library/BH/include/boost/date_time/microsec_time_clock.hpp:18,
from C:/Users/biocbuild/bbs-3.11-bioc/R/library/BH/include/boost/interprocess/detail/posix_time_types_wrk.hpp:31,
from C:/Users/biocbuild/bbs-3.11-bioc/R/library/BH/include/boost/interprocess/sync/spin/mutex.hpp:24,
from C:/Users/biocbuild/bbs-3.11-bioc/R/library/BH/include/boost/interprocess/sync/windows/sync_utils.hpp:25,
from C:/Users/biocbuild/bbs-3.11-bioc/R/library/BH/include/boost/interprocess/mapped_region.hpp:50,
from sharedMemory.cpp:16:
C:/Users/biocbuild/bbs-3.11-bioc/R/library/BH/include/boost/smart_ptr/shared_ptr.hpp:256:65: warning: 'template<class> class std::auto_ptr' is deprecated [-Wdeprecated-declarations]
template< class T, class R > struct sp_enable_if_auto_ptr< std::auto_ptr< T >, R >
^~~~~~~~
In file included from C:/rtools40/mingw64/include/c++/8.3.0/bits/locale_conv.h:41,
from C:/rtools40/mingw64/include/c++/8.3.0/locale:43,
from C:/rtools40/mingw64/include/c++/8.3.0/iomanip:43,
from C:/Users/biocbuild/bbs-3.11-bioc/R/library/Rcpp/include/RcppCommon.h:52,
from C:/Users/biocbuild/bbs-3.11-bioc/R/library/Rcpp/include/Rcpp.h:27,
from sharedMemory.cpp:15:
C:/rtools40/mingw64/include/c++/8.3.0/bits/unique_ptr.h:53:28: note: declared here
template<typename> class auto_ptr;
^~~~~~~~
In file included from C:/Users/biocbuild/bbs-3.11-bioc/R/library/BH/include/boost/shared_ptr.hpp:17,
from C:/Users/biocbuild/bbs-3.11-bioc/R/library/BH/include/boost/date_time/microsec_time_clock.hpp:18,
from C:/Users/biocbuild/bbs-3.11-bioc/R/library/BH/include/boost/interprocess/detail/posix_time_types_wrk.hpp:31,
from C:/Users/biocbuild/bbs-3.11-bioc/R/library/BH/include/boost/interprocess/sync/spin/mutex.hpp:24,
from C:/Users/biocbuild/bbs-3.11-bioc/R/library/BH/include/boost/interprocess/sync/windows/sync_utils.hpp:25,
from C:/Users/biocbuild/bbs-3.11-bioc/R/library/BH/include/boost/interprocess/mapped_region.hpp:50,
from sharedMemory.cpp:16:
C:/Users/biocbuild/bbs-3.11-bioc/R/library/BH/include/boost/smart_ptr/shared_ptr.hpp:471:31: warning: 'template<class> class std::auto_ptr' is deprecated [-Wdeprecated-declarations]
explicit shared_ptr( std::auto_ptr<Y> & r ): px(r.get()), pn()
^~~~~~~~
In file included from C:/rtools40/mingw64/include/c++/8.3.0/bits/locale_conv.h:41,
from C:/rtools40/mingw64/include/c++/8.3.0/locale:43,
from C:/rtools40/mingw64/include/c++/8.3.0/iomanip:43,
from C:/Users/biocbuild/bbs-3.11-bioc/R/library/Rcpp/include/RcppCommon.h:52,
from C:/Users/biocbuild/bbs-3.11-bioc/R/library/Rcpp/include/Rcpp.h:27,
from sharedMemory.cpp:15:
C:/rtools40/mingw64/include/c++/8.3.0/bits/unique_ptr.h:53:28: note: declared here
template<typename> class auto_ptr;
^~~~~~~~
In file included from C:/Users/biocbuild/bbs-3.11-bioc/R/library/BH/include/boost/shared_ptr.hpp:17,
from C:/Users/biocbuild/bbs-3.11-bioc/R/library/BH/include/boost/date_time/microsec_time_clock.hpp:18,
from C:/Users/biocbuild/bbs-3.11-bioc/R/library/BH/include/boost/interprocess/detail/posix_time_types_wrk.hpp:31,
from C:/Users/biocbuild/bbs-3.11-bioc/R/library/BH/include/boost/interprocess/sync/spin/mutex.hpp:24,
from C:/Users/biocbuild/bbs-3.11-bioc/R/library/BH/include/boost/interprocess/sync/windows/sync_utils.hpp:25,
from C:/Users/biocbuild/bbs-3.11-bioc/R/library/BH/include/boost/interprocess/mapped_region.hpp:50,
from sharedMemory.cpp:16:
C:/Users/biocbuild/bbs-3.11-bioc/R/library/BH/include/boost/smart_ptr/shared_ptr.hpp:484:22: warning: 'template<class> class std::auto_ptr' is deprecated [-Wdeprecated-declarations]
shared_ptr( std::auto_ptr<Y> && r ): px(r.get()), pn()
^~~~~~~~
In file included from C:/rtools40/mingw64/include/c++/8.3.0/bits/locale_conv.h:41,
from C:/rtools40/mingw64/include/c++/8.3.0/locale:43,
from C:/rtools40/mingw64/include/c++/8.3.0/iomanip:43,
from C:/Users/biocbuild/bbs-3.11-bioc/R/library/Rcpp/include/RcppCommon.h:52,
from C:/Users/biocbuild/bbs-3.11-bioc/R/library/Rcpp/include/Rcpp.h:27,
from sharedMemory.cpp:15:
C:/rtools40/mingw64/include/c++/8.3.0/bits/unique_ptr.h:53:28: note: declared here
template<typename> class auto_ptr;
^~~~~~~~
In file included from C:/Users/biocbuild/bbs-3.11-bioc/R/library/BH/include/boost/shared_ptr.hpp:17,
from C:/Users/biocbuild/bbs-3.11-bioc/R/library/BH/include/boost/date_time/microsec_time_clock.hpp:18,
from C:/Users/biocbuild/bbs-3.11-bioc/R/library/BH/include/boost/interprocess/detail/posix_time_types_wrk.hpp:31,
from C:/Users/biocbuild/bbs-3.11-bioc/R/library/BH/include/boost/interprocess/sync/spin/mutex.hpp:24,
from C:/Users/biocbuild/bbs-3.11-bioc/R/library/BH/include/boost/interprocess/sync/windows/sync_utils.hpp:25,
from C:/Users/biocbuild/bbs-3.11-bioc/R/library/BH/include/boost/interprocess/mapped_region.hpp:50,
from sharedMemory.cpp:16:
C:/Users/biocbuild/bbs-3.11-bioc/R/library/BH/include/boost/smart_ptr/shared_ptr.hpp:567:34: warning: 'template<class> class std::auto_ptr' is deprecated [-Wdeprecated-declarations]
shared_ptr & operator=( std::auto_ptr<Y> & r )
^~~~~~~~
In file included from C:/rtools40/mingw64/include/c++/8.3.0/bits/locale_conv.h:41,
from C:/rtools40/mingw64/include/c++/8.3.0/locale:43,
from C:/rtools40/mingw64/include/c++/8.3.0/iomanip:43,
from C:/Users/biocbuild/bbs-3.11-bioc/R/library/Rcpp/include/RcppCommon.h:52,
from C:/Users/biocbuild/bbs-3.11-bioc/R/library/Rcpp/include/Rcpp.h:27,
from sharedMemory.cpp:15:
C:/rtools40/mingw64/include/c++/8.3.0/bits/unique_ptr.h:53:28: note: declared here
template<typename> class auto_ptr;
^~~~~~~~
In file included from C:/Users/biocbuild/bbs-3.11-bioc/R/library/BH/include/boost/shared_ptr.hpp:17,
from C:/Users/biocbuild/bbs-3.11-bioc/R/library/BH/include/boost/date_time/microsec_time_clock.hpp:18,
from C:/Users/biocbuild/bbs-3.11-bioc/R/library/BH/include/boost/interprocess/detail/posix_time_types_wrk.hpp:31,
from C:/Users/biocbuild/bbs-3.11-bioc/R/library/BH/include/boost/interprocess/sync/spin/mutex.hpp:24,
from C:/Users/biocbuild/bbs-3.11-bioc/R/library/BH/include/boost/interprocess/sync/windows/sync_utils.hpp:25,
from C:/Users/biocbuild/bbs-3.11-bioc/R/library/BH/include/boost/interprocess/mapped_region.hpp:50,
from sharedMemory.cpp:16:
C:/Users/biocbuild/bbs-3.11-bioc/R/library/BH/include/boost/smart_ptr/shared_ptr.hpp:576:34: warning: 'template<class> class std::auto_ptr' is deprecated [-Wdeprecated-declarations]
shared_ptr & operator=( std::auto_ptr<Y> && r )
^~~~~~~~
In file included from C:/rtools40/mingw64/include/c++/8.3.0/bits/locale_conv.h:41,
from C:/rtools40/mingw64/include/c++/8.3.0/locale:43,
from C:/rtools40/mingw64/include/c++/8.3.0/iomanip:43,
from C:/Users/biocbuild/bbs-3.11-bioc/R/library/Rcpp/include/RcppCommon.h:52,
from C:/Users/biocbuild/bbs-3.11-bioc/R/library/Rcpp/include/Rcpp.h:27,
from sharedMemory.cpp:15:
C:/rtools40/mingw64/include/c++/8.3.0/bits/unique_ptr.h:53:28: note: declared here
template<typename> class auto_ptr;
^~~~~~~~
In file included from C:/Users/biocbuild/bbs-3.11-bioc/R/library/BH/include/boost/shared_ptr.hpp:17,
from C:/Users/biocbuild/bbs-3.11-bioc/R/library/BH/include/boost/date_time/microsec_time_clock.hpp:18,
from C:/Users/biocbuild/bbs-3.11-bioc/R/library/BH/include/boost/interprocess/detail/posix_time_types_wrk.hpp:31,
from C:/Users/biocbuild/bbs-3.11-bioc/R/library/BH/include/boost/interprocess/sync/spin/mutex.hpp:24,
from C:/Users/biocbuild/bbs-3.11-bioc/R/library/BH/include/boost/interprocess/sync/windows/sync_utils.hpp:25,
from C:/Users/biocbuild/bbs-3.11-bioc/R/library/BH/include/boost/interprocess/mapped_region.hpp:50,
from sharedMemory.cpp:16:
C:/Users/biocbuild/bbs-3.11-bioc/R/library/BH/include/boost/smart_ptr/shared_ptr.hpp: In member function 'boost::shared_ptr<T>& boost::shared_ptr<T>::operator=(std::auto_ptr<_Up>&&)':
C:/Users/biocbuild/bbs-3.11-bioc/R/library/BH/include/boost/smart_ptr/shared_ptr.hpp:578:38: warning: 'template<class> class std::auto_ptr' is deprecated [-Wdeprecated-declarations]
this_type( static_cast< std::auto_ptr<Y> && >( r ) ).swap( *this );
^~~~~~~~
In file included from C:/rtools40/mingw64/include/c++/8.3.0/bits/locale_conv.h:41,
from C:/rtools40/mingw64/include/c++/8.3.0/locale:43,
from C:/rtools40/mingw64/include/c++/8.3.0/iomanip:43,
from C:/Users/biocbuild/bbs-3.11-bioc/R/library/Rcpp/include/RcppCommon.h:52,
from C:/Users/biocbuild/bbs-3.11-bioc/R/library/Rcpp/include/Rcpp.h:27,
from sharedMemory.cpp:15:
C:/rtools40/mingw64/include/c++/8.3.0/bits/unique_ptr.h:53:28: note: declared here
template<typename> class auto_ptr;
^~~~~~~~
"C:/rtools40/mingw64/bin/"g++ -std=gnu++11 -I"C:/Users/BIOCBU~1/BBS-3~1.11-/R/include" -DNDEBUG -DRCPP_USE_UNWIND_PROTECT -I'C:/Users/biocbuild/bbs-3.11-bioc/R/library/BH/include' -I'C:/Users/biocbuild/bbs-3.11-bioc/R/library/Rcpp/include' -I"C:/extsoft/include" -O2 -Wall -mfpmath=sse -msse2 -mstackrealign -c tools.cpp -o tools.o
C:/rtools40/mingw64/bin/g++ -shared -s -static-libgcc -o SharedObject.dll tmp.def C_interface.o RcppExports.o altrepRegistration.o sharedMemory.o tools.o -LC:/extsoft/lib/x64 -LC:/extsoft/lib -LC:/Users/BIOCBU~1/BBS-3~1.11-/R/bin/x64 -lR
"C:/rtools40/mingw64/bin/"ar -crv SharedObject.a *.o
a - C_interface.o
a - RcppExports.o
a - altrepRegistration.o
a - sharedMemory.o
a - tools.o
cp "sharedMemory.h" "../inst/include/SharedObject/"&&\
cp "SharedObject.a" "../inst/usrlib/x64/"
installing to C:/Users/biocbuild/bbs-3.11-bioc/meat/SharedObject.buildbin-libdir/SharedObject/libs/x64
** testing if installed package can be loaded
* MD5 sums
packaged installation of 'SharedObject' as SharedObject_1.2.2.zip
* DONE (SharedObject)
* installing to library 'C:/Users/biocbuild/bbs-3.11-bioc/R/library'
package 'SharedObject' successfully unpacked and MD5 sums checked
