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INSTALL report for RaggedExperiment on tokay2

This page was generated on 2020-10-17 11:57:32 -0400 (Sat, 17 Oct 2020).

TO THE DEVELOPERS/MAINTAINERS OF THE RaggedExperiment PACKAGE: Please make sure to use the following settings in order to reproduce any error or warning you see on this page.
Package 1410/1905HostnameOS / ArchINSTALLBUILDCHECKBUILD BIN
RaggedExperiment 1.12.0
Martin Morgan
Snapshot Date: 2020-10-16 14:40:19 -0400 (Fri, 16 Oct 2020)
URL: https://git.bioconductor.org/packages/RaggedExperiment
Branch: RELEASE_3_11
Last Commit: e716e90
Last Changed Date: 2020-04-27 15:06:56 -0400 (Mon, 27 Apr 2020)
malbec2 Linux (Ubuntu 18.04.4 LTS) / x86_64  OK  OK  OK UNNEEDED, same version exists in internal repository
tokay2 Windows Server 2012 R2 Standard / x64 [ OK ] OK  WARNINGS  OK UNNEEDED, same version exists in internal repository
machv2 macOS 10.14.6 Mojave / x86_64  OK  OK  OK  OK UNNEEDED, same version exists in internal repository

Summary

Package: RaggedExperiment
Version: 1.12.0
Command: C:\cygwin\bin\curl.exe -O https://malbec2.bioconductor.org/BBS/3.11/bioc/src/contrib/RaggedExperiment_1.12.0.tar.gz && rm -rf RaggedExperiment.buildbin-libdir && mkdir RaggedExperiment.buildbin-libdir && C:\Users\biocbuild\bbs-3.11-bioc\R\bin\R.exe CMD INSTALL --merge-multiarch --build --library=RaggedExperiment.buildbin-libdir RaggedExperiment_1.12.0.tar.gz && C:\Users\biocbuild\bbs-3.11-bioc\R\bin\R.exe CMD INSTALL RaggedExperiment_1.12.0.zip && rm RaggedExperiment_1.12.0.tar.gz RaggedExperiment_1.12.0.zip
StartedAt: 2020-10-16 18:15:44 -0400 (Fri, 16 Oct 2020)
EndedAt: 2020-10-16 18:16:26 -0400 (Fri, 16 Oct 2020)
EllapsedTime: 42.3 seconds
RetCode: 0
Status:  OK  

Command output

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###
### Running command:
###
###   C:\cygwin\bin\curl.exe -O https://malbec2.bioconductor.org/BBS/3.11/bioc/src/contrib/RaggedExperiment_1.12.0.tar.gz && rm -rf RaggedExperiment.buildbin-libdir && mkdir RaggedExperiment.buildbin-libdir && C:\Users\biocbuild\bbs-3.11-bioc\R\bin\R.exe CMD INSTALL --merge-multiarch --build --library=RaggedExperiment.buildbin-libdir RaggedExperiment_1.12.0.tar.gz && C:\Users\biocbuild\bbs-3.11-bioc\R\bin\R.exe CMD INSTALL RaggedExperiment_1.12.0.zip && rm RaggedExperiment_1.12.0.tar.gz RaggedExperiment_1.12.0.zip
###
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  % Total    % Received % Xferd  Average Speed   Time    Time     Time  Current
                                 Dload  Upload   Total   Spent    Left  Speed

  0     0    0     0    0     0      0      0 --:--:-- --:--:-- --:--:--     0
100 44648  100 44648    0     0   300k      0 --:--:-- --:--:-- --:--:--  313k

install for i386

* installing *source* package 'RaggedExperiment' ...
** using staged installation
** R
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
  converting help for package 'RaggedExperiment'
    finding HTML links ... done
    RaggedExperiment-class                  html  
    finding level-2 HTML links ... done

Rd warning: C:/Users/biocbuild/bbs-3.11-bioc/tmpdir/RtmpWaVzzB/R.INSTALL221474524648/RaggedExperiment/man/RaggedExperiment-class.Rd:117: file link 'GRanges' in package 'GenomicRanges' does not exist and so has been treated as a topic
Rd warning: C:/Users/biocbuild/bbs-3.11-bioc/tmpdir/RtmpWaVzzB/R.INSTALL221474524648/RaggedExperiment/man/RaggedExperiment-class.Rd:141: file link 'GRangesList' in package 'GenomicRanges' does not exist and so has been treated as a topic
Rd warning: C:/Users/biocbuild/bbs-3.11-bioc/tmpdir/RtmpWaVzzB/R.INSTALL221474524648/RaggedExperiment/man/RaggedExperiment-class.Rd:142: file link 'GAlignmentPairs' in package 'GenomicAlignments' does not exist and so has been treated as a topic
Rd warning: C:/Users/biocbuild/bbs-3.11-bioc/tmpdir/RtmpWaVzzB/R.INSTALL221474524648/RaggedExperiment/man/RaggedExperiment-class.Rd:143: file link 'GAlignmentsList' in package 'GenomicAlignments' does not exist and so has been treated as a topic
Rd warning: C:/Users/biocbuild/bbs-3.11-bioc/tmpdir/RtmpWaVzzB/R.INSTALL221474524648/RaggedExperiment/man/RaggedExperiment-class.Rd:152: file link 'GRangesList' in package 'GenomicRanges' does not exist and so has been treated as a topic
Rd warning: C:/Users/biocbuild/bbs-3.11-bioc/tmpdir/RtmpWaVzzB/R.INSTALL221474524648/RaggedExperiment/man/RaggedExperiment-class.Rd:154: file link 'exonsBy' in package 'GenomicFeatures' does not exist and so has been treated as a topic
Rd warning: C:/Users/biocbuild/bbs-3.11-bioc/tmpdir/RtmpWaVzzB/R.INSTALL221474524648/RaggedExperiment/man/RaggedExperiment-class.Rd:167: file link 'GRangesList' in package 'GenomicRanges' does not exist and so has been treated as a topic
Rd warning: C:/Users/biocbuild/bbs-3.11-bioc/tmpdir/RtmpWaVzzB/R.INSTALL221474524648/RaggedExperiment/man/RaggedExperiment-class.Rd:172: file link 'GRanges' in package 'GenomicRanges' does not exist and so has been treated as a topic
Rd warning: C:/Users/biocbuild/bbs-3.11-bioc/tmpdir/RtmpWaVzzB/R.INSTALL221474524648/RaggedExperiment/man/RaggedExperiment-class.Rd:173: file link 'GAlignments' in package 'GenomicAlignments' does not exist and so has been treated as a topic
Rd warning: C:/Users/biocbuild/bbs-3.11-bioc/tmpdir/RtmpWaVzzB/R.INSTALL221474524648/RaggedExperiment/man/RaggedExperiment-class.Rd:182: file link 'DataFrame' in package 'S4Vectors' does not exist and so has been treated as a topic
Rd warning: C:/Users/biocbuild/bbs-3.11-bioc/tmpdir/RtmpWaVzzB/R.INSTALL221474524648/RaggedExperiment/man/RaggedExperiment-class.Rd:206: file link 'IntegerRanges' in package 'IRanges' does not exist and so has been treated as a topic
Rd warning: C:/Users/biocbuild/bbs-3.11-bioc/tmpdir/RtmpWaVzzB/R.INSTALL221474524648/RaggedExperiment/man/RaggedExperiment-class.Rd:206: file link 'IRanges' in package 'IRanges' does not exist and so has been treated as a topic
Rd warning: C:/Users/biocbuild/bbs-3.11-bioc/tmpdir/RtmpWaVzzB/R.INSTALL221474524648/RaggedExperiment/man/RaggedExperiment-class.Rd:207: file link 'Views' in package 'IRanges' does not exist and so has been treated as a topic
Rd warning: C:/Users/biocbuild/bbs-3.11-bioc/tmpdir/RtmpWaVzzB/R.INSTALL221474524648/RaggedExperiment/man/RaggedExperiment-class.Rd:207: file link 'IntegerRangesList' in package 'IRanges' does not exist and so has been treated as a topic
Rd warning: C:/Users/biocbuild/bbs-3.11-bioc/tmpdir/RtmpWaVzzB/R.INSTALL221474524648/RaggedExperiment/man/RaggedExperiment-class.Rd:207: file link 'IRangesList' in package 'IRanges' does not exist and so has been treated as a topic
Rd warning: C:/Users/biocbuild/bbs-3.11-bioc/tmpdir/RtmpWaVzzB/R.INSTALL221474524648/RaggedExperiment/man/RaggedExperiment-class.Rd:208: file link 'ViewsList' in package 'IRanges' does not exist and so has been treated as a topic
Rd warning: C:/Users/biocbuild/bbs-3.11-bioc/tmpdir/RtmpWaVzzB/R.INSTALL221474524648/RaggedExperiment/man/RaggedExperiment-class.Rd:209: file link 'IntegerRanges' in package 'IRanges' does not exist and so has been treated as a topic
Rd warning: C:/Users/biocbuild/bbs-3.11-bioc/tmpdir/RtmpWaVzzB/R.INSTALL221474524648/RaggedExperiment/man/RaggedExperiment-class.Rd:213: file link 'IntegerRangesList' in package 'IRanges' does not exist and so has been treated as a topic
Rd warning: C:/Users/biocbuild/bbs-3.11-bioc/tmpdir/RtmpWaVzzB/R.INSTALL221474524648/RaggedExperiment/man/RaggedExperiment-class.Rd:215: file link 'IntegerRangesList' in package 'IRanges' does not exist and so has been treated as a topic
Rd warning: C:/Users/biocbuild/bbs-3.11-bioc/tmpdir/RtmpWaVzzB/R.INSTALL221474524648/RaggedExperiment/man/RaggedExperiment-class.Rd:280: file link 'IntegerRanges' in package 'IRanges' does not exist and so has been treated as a topic
Rd warning: C:/Users/biocbuild/bbs-3.11-bioc/tmpdir/RtmpWaVzzB/R.INSTALL221474524648/RaggedExperiment/man/RaggedExperiment-class.Rd:280: file link 'IRanges' in package 'IRanges' does not exist and so has been treated as a topic
Rd warning: C:/Users/biocbuild/bbs-3.11-bioc/tmpdir/RtmpWaVzzB/R.INSTALL221474524648/RaggedExperiment/man/RaggedExperiment-class.Rd:281: file link 'Views' in package 'IRanges' does not exist and so has been treated as a topic
Rd warning: C:/Users/biocbuild/bbs-3.11-bioc/tmpdir/RtmpWaVzzB/R.INSTALL221474524648/RaggedExperiment/man/RaggedExperiment-class.Rd:281: file link 'IntegerRangesList' in package 'IRanges' does not exist and so has been treated as a topic
Rd warning: C:/Users/biocbuild/bbs-3.11-bioc/tmpdir/RtmpWaVzzB/R.INSTALL221474524648/RaggedExperiment/man/RaggedExperiment-class.Rd:281: file link 'IRangesList' in package 'IRanges' does not exist and so has been treated as a topic
Rd warning: C:/Users/biocbuild/bbs-3.11-bioc/tmpdir/RtmpWaVzzB/R.INSTALL221474524648/RaggedExperiment/man/RaggedExperiment-class.Rd:282: file link 'ViewsList' in package 'IRanges' does not exist and so has been treated as a topic
Rd warning: C:/Users/biocbuild/bbs-3.11-bioc/tmpdir/RtmpWaVzzB/R.INSTALL221474524648/RaggedExperiment/man/RaggedExperiment-class.Rd:283: file link 'IntegerRanges' in package 'IRanges' does not exist and so has been treated as a topic
Rd warning: C:/Users/biocbuild/bbs-3.11-bioc/tmpdir/RtmpWaVzzB/R.INSTALL221474524648/RaggedExperiment/man/RaggedExperiment-class.Rd:287: file link 'IntegerRangesList' in package 'IRanges' does not exist and so has been treated as a topic
Rd warning: C:/Users/biocbuild/bbs-3.11-bioc/tmpdir/RtmpWaVzzB/R.INSTALL221474524648/RaggedExperiment/man/RaggedExperiment-class.Rd:289: file link 'IntegerRangesList' in package 'IRanges' does not exist and so has been treated as a topic
Rd warning: C:/Users/biocbuild/bbs-3.11-bioc/tmpdir/RtmpWaVzzB/R.INSTALL221474524648/RaggedExperiment/man/RaggedExperiment-class.Rd:415: file link 'SimpleList' in package 'S4Vectors' does not exist and so has been treated as a topic
Rd warning: C:/Users/biocbuild/bbs-3.11-bioc/tmpdir/RtmpWaVzzB/R.INSTALL221474524648/RaggedExperiment/man/RaggedExperiment-class.Rd:429: file link 'DataFrame' in package 'S4Vectors' does not exist and so has been treated as a topic
    RaggedExperiment-package                html  
    assay-functions                         html  
    coerce-functions                        html  
** building package indices
** installing vignettes
** testing if installed package can be loaded from temporary location
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path

install for x64

* installing *source* package 'RaggedExperiment' ...
** testing if installed package can be loaded
* MD5 sums
packaged installation of 'RaggedExperiment' as RaggedExperiment_1.12.0.zip
* DONE (RaggedExperiment)
* installing to library 'C:/Users/biocbuild/bbs-3.11-bioc/R/library'
package 'RaggedExperiment' successfully unpacked and MD5 sums checked